BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516793.1|CO516793 s13dSG94E0900069_446914 Glandular tr... 36 0.026
gb|CO515305.1|CO515305 s13dSG48D0600058_417669 Glandular tr... 34 0.10
gb|AF439380.1| Medicago sativa retrotransposon polyprotein ... 34 0.10
gb|U15591.1|MSU15591 Medicago sativa cytosolic glutamine sy... 32 0.40
emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetas... 32 0.40
gb|DQ073091.1| Medicago sativa clone Agat012 SSR marker seq... 32 0.40
>gb|CO516793.1|CO516793 s13dSG94E0900069_446914 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 125
Score = 36.2 bits (18), Expect = 0.026
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 428 tgatgatgatgttgttgt 445
||||||||||||||||||
Sbjct: 68 tgatgatgatgttgttgt 85
>gb|CO515305.1|CO515305 s13dSG48D0600058_417669 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 615
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 425 tcttgatgatgatgttg 441
|||||||||||||||||
Sbjct: 115 tcttgatgatgatgttg 99
>gb|AF439380.1| Medicago sativa retrotransposon polyprotein gene interrupted by LTR
retroelement MCIRE, complete sequence
Length = 18789
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 116 aaagacctatcctgcca 132
|||||||||||||||||
Sbjct: 3279 aaagacctatcctgcca 3263
>gb|U15591.1|MSU15591 Medicago sativa cytosolic glutamine synthetase (GS1) mRNA, complete
cds
Length = 1372
Score = 32.2 bits (16), Expect = 0.40
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 98 ccatgttattactgataaaa 117
||||||||||| ||||||||
Sbjct: 1348 ccatgttattaatgataaaa 1329
>emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetase gene
Length = 4464
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 428 tgatgatgatgttgtt 443
||||||||||||||||
Sbjct: 883 tgatgatgatgttgtt 898
>gb|DQ073091.1| Medicago sativa clone Agat012 SSR marker sequence
Length = 659
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 105 attactgataaaaaga 120
||||||||||||||||
Sbjct: 626 attactgataaaaaga 641
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2028
Number of Sequences: 7669
Number of extensions: 2028
Number of successful extensions: 422
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 9
length of query: 570
length of database: 3,745,706
effective HSP length: 16
effective length of query: 554
effective length of database: 3,623,002
effective search space: 2007143108
effective search space used: 2007143108
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)