BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3478999.2.1
(825 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDN... 192 3e-049
gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDN... 165 6e-041
gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted... 36 0.038
gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular tr... 36 0.038
gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular tr... 36 0.038
gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular tr... 36 0.038
gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular tr... 36 0.038
>gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 345
Score = 192 bits (97), Expect = 3e-049
Identities = 255/308 (82%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||| ||||| ||||| || || ||||||||||||| || ||||| | ||||| ||
Sbjct: 317 atggctaacagtaaccttcctcgaagaatcatcaaggaaacacagcgtntgctcagtgag 258
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
|||||||| || ||||| || || || |||||||| || |||||||| |||||||| |||
Sbjct: 257 ccagcgcctggaattagtgcatccccttcggaagacaatatgcggtatttcaatgtgatg 198
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| | ||||| || |||||||| |||||||||||||| || ||||| |||
Sbjct: 197 atccttggcccaactcagtctccttatgaagggggagttttcaagctagacctatttttg 138
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
||||| ||||||||||||||||| || || || ||||| | || ||||| || |||||
Sbjct: 137 cctgaagaatatccaatggctgctccaaaggtcaggttcttgacaaaaatatatcatcct 78
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||| |||||||| || || ||||| || || || |||||||||||
Sbjct: 77 aacattgacaagcttggcaggatatgtcttgatattctgaaagataagtggagtcccgcc 18
Query: 355 cttcagat 362
||||||||
Sbjct: 17 cttcagat 10
>gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 344
Score = 165 bits (83), Expect = 6e-041
Identities = 233/283 (82%)
Strand = Plus / Minus
Query: 80 gaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcgc 139
||||||||||||| || ||||| | ||||| || |||||||| || ||| | || || |
Sbjct: 292 gaatcatcaaggaaacacagcgtttgctcagtgagccagcgcctggaattcgtgcatccc 233
Query: 140 cgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccct 199
| ||||||| || |||||||| |||||||| |||||||||||||| | ||||| || |
Sbjct: 232 cttcggaagtcaatatgcggtatttcaatgtgatgatccttggcccaactcagtctcctt 173
Query: 200 atgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccc 259
||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||| |
Sbjct: 172 atgaagggggagttttcaagctagaactatttttgcctgaagaatatccaatggctgctc 113
Query: 260 cgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatat 319
| || ||||| || | || ||||| || ||||| ||||||||||||||||| |||||||
Sbjct: 112 caaaggttagattcttgacaaaaatatatcatcctaacattgacaagcttggcaggatat 53
Query: 320 gcctcgacattcttaaggacaaatggagtcccgctcttcagat 362
| || || ||||| || || || |||||||| || ||||||||
Sbjct: 52 gtcttgatattctgaaagataagtggagtcctgcccttcagat 10
>gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 335
Score = 36.2 bits (18), Expect = 0.038
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 322 ctcgacattcttaaggacaaatggag 347
||||||||||||||||| |||||||
Sbjct: 123 ctcgacattcttaaggaacaatggag 98
>gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 36.2 bits (18), Expect = 0.038
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggag 347
||||||||||||||||| |||||||
Sbjct: 453 ctcgacattcttaaggaacaatggag 478
>gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 490
Score = 36.2 bits (18), Expect = 0.038
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggag 347
||||||||||||||||| |||||||
Sbjct: 355 ctcgacattcttaaggaacaatggag 380
>gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 36.2 bits (18), Expect = 0.038
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggag 347
||||||||||||||||| |||||||
Sbjct: 329 ctcgacattcttaaggaacaatggag 354
>gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 418
Score = 36.2 bits (18), Expect = 0.038
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggag 347
||||||||||||||||| |||||||
Sbjct: 330 ctcgacattcttaaggaacaatggag 355
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1451
Number of Sequences: 7669
Number of extensions: 1451
Number of successful extensions: 354
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 7
length of query: 825
length of database: 3,745,706
effective HSP length: 16
effective length of query: 809
effective length of database: 3,623,002
effective search space: 2931008618
effective search space used: 2931008618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)