BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3390529.2.1
(407 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515980.1|CO515980 s13dSG61E0700055_445288 Glandular tr... 38 0.005
gb|CO516149.1|CO516149 s13dSG67A0200005_445626 Glandular tr... 38 0.005
gb|M91080.1|ALFMSCHI2 Medicago sativa (cultivar Iroquois) c... 38 0.005
gb|M91079.1|ALFMSCHI1 Medicago sativa (cultivar Iroquois) c... 38 0.005
>gb|CO515980.1|CO515980 s13dSG61E0700055_445288 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 437
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 175 aacttcatcaagttcacggccat 197
||||||||||||||||| |||||
Sbjct: 184 aacttcatcaagttcactgccat 206
>gb|CO516149.1|CO516149 s13dSG67A0200005_445626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 367
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 175 aacttcatcaagttcacggccat 197
||||||||||||||||| |||||
Sbjct: 181 aacttcatcaagttcactgccat 203
>gb|M91080.1|ALFMSCHI2 Medicago sativa (cultivar Iroquois) chalcone isomerase (MsCHI-2)
mRNA, 3'end
Length = 836
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 175 aacttcatcaagttcacggccat 197
||||||||||||||||| |||||
Sbjct: 53 aacttcatcaagttcactgccat 75
>gb|M91079.1|ALFMSCHI1 Medicago sativa (cultivar Iroquois) chalcone isomerase (MsCHI-1)
mRNA, complete cds
Length = 950
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 175 aacttcatcaagttcacggccat 197
||||||||||||||||| |||||
Sbjct: 167 aacttcatcaagttcactgccat 189
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 410
Number of Sequences: 7669
Number of extensions: 410
Number of successful extensions: 129
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 4
length of query: 407
length of database: 3,745,706
effective HSP length: 15
effective length of query: 392
effective length of database: 3,630,671
effective search space: 1423223032
effective search space used: 1423223032
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)