BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513137.1|CO513137 s13dSG23C0900066_129438 Glandular tr... 36 0.025
gb|L37606.1|ALFNDGS Medicago sativa (clone GG16-1) NADH-dep... 34 0.098
gb|CO512394.1|CO512394 s13dSG80D0600046_114302 Glandular tr... 32 0.39
gb|CO513086.1|CO513086 s13dSG89F0500043_122098 Glandular tr... 32 0.39
gb|CO513772.1|CO513772 s13dSG82B0600045_156206 Glandular tr... 32 0.39
emb|X78994.1|MSF3H1 M.sativa F3H1 gene 32 0.39
emb|X81812.1|MSF3H2 M.sativa F3H2 gene 32 0.39
>gb|CO513137.1|CO513137 s13dSG23C0900066_129438 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 36.2 bits (18), Expect = 0.025
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 114 gcggtttattcggtttcg 131
||||||||||||||||||
Sbjct: 555 gcggtttattcggtttcg 572
>gb|L37606.1|ALFNDGS Medicago sativa (clone GG16-1) NADH-dependent glutamate synthase
gene, complete cds
Length = 14306
Score = 34.2 bits (17), Expect = 0.098
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 510 caaataaaaaagaaata 526
|||||||||||||||||
Sbjct: 1061 caaataaaaaagaaata 1077
>gb|CO512394.1|CO512394 s13dSG80D0600046_114302 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 371 ttttagcaatctactg 386
||||||||||||||||
Sbjct: 485 ttttagcaatctactg 500
>gb|CO513086.1|CO513086 s13dSG89F0500043_122098 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 371 ttttagcaatctactg 386
||||||||||||||||
Sbjct: 494 ttttagcaatctactg 509
>gb|CO513772.1|CO513772 s13dSG82B0600045_156206 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 371 ttttagcaatctactg 386
||||||||||||||||
Sbjct: 486 ttttagcaatctactg 501
>emb|X78994.1|MSF3H1 M.sativa F3H1 gene
Length = 4300
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 356 tccagcaattgaaatt 371
||||||||||||||||
Sbjct: 2084 tccagcaattgaaatt 2069
>emb|X81812.1|MSF3H2 M.sativa F3H2 gene
Length = 4089
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 356 tccagcaattgaaatt 371
||||||||||||||||
Sbjct: 2019 tccagcaattgaaatt 2004
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1429
Number of Sequences: 7669
Number of extensions: 1429
Number of successful extensions: 388
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 13
length of query: 545
length of database: 3,745,706
effective HSP length: 16
effective length of query: 529
effective length of database: 3,623,002
effective search space: 1916568058
effective search space used: 1916568058
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)