BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203888.2.1
(787 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410110.1|AJ410110 AJ410110 Medicago sativa library (Ka... 50 2e-006
emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2 50 2e-006
gb|L10211.1|ALFIOM Medicago sativa isoliquiritigenin 2'-O-m... 34 0.14
>gb|AJ410110.1|AJ410110 AJ410110 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U281, mRNA sequence
Length = 754
Score = 50.1 bits (25), Expect = 2e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 56 ctcgtgccgaattcctgcagcccgg 32
>emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2
Length = 1193
Score = 50.1 bits (25), Expect = 2e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 65 ctcgtgccgaattcctgcagcccgg 41
>gb|L10211.1|ALFIOM Medicago sativa isoliquiritigenin 2'-O-methyltransferase mRNA,
complete cds
Length = 1300
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 552 aacatatctccgccaacatgc 572
||||||||||| |||||||||
Sbjct: 814 aacatatctcctccaacatgc 794
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 956
Number of Sequences: 7669
Number of extensions: 956
Number of successful extensions: 281
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 3
length of query: 787
length of database: 3,745,706
effective HSP length: 16
effective length of query: 771
effective length of database: 3,623,002
effective search space: 2793334542
effective search space used: 2793334542
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)