BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191506.2.1
(1208 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 42 0.001
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 42 0.001
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 42 0.001
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 40 0.004
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 40 0.004
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 40 0.004
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 40 0.004
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 40 0.004
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 40 0.004
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 40 0.004
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 40 0.004
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 40 0.004
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 40 0.004
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 40 0.004
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 40 0.004
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 40 0.004
gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted... 40 0.004
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 40 0.004
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 36 0.056
gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted... 36 0.056
gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted... 36 0.056
gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted... 36 0.056
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 36 0.056
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 36 0.056
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 36 0.056
gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted c... 36 0.056
gb|CO512146.1|CO512146 s13dSG34D1200094_108612 Glandular tr... 36 0.056
gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x va... 36 0.056
emb|AX003695.1| Sequence 2 from Patent WO9925852 36 0.056
dbj|BD086096.1| Stress-tolerant gene 36 0.056
emb|X97606.1|MSRNAAAA M.sativa mRNA translated from abscisi... 36 0.056
gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted... 34 0.22
gb|CO513113.1|CO513113 s13dSG23A0600037_129390 Glandular tr... 34 0.22
gb|CO516964.1|CO516964 s13dSG81B0900075_468474 Glandular tr... 34 0.22
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1188 cgtacctgcccgggcggccgc 1208
|||||||||||||||||||||
Sbjct: 250 cgtacctgcccgggcggccgc 270
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1188 cgtacctgcccgggcggccgc 1208
|||||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggccgc 5
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1188 cgtacctgcccgggcggccgc 1208
|||||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggccgc 5
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgc 260
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 112 gtacctgcccgggcggccgc 93
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 291 gtacctgcccgggcggccgc 310
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgc 4
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 370 gtacctgcccgggcggccgc 389
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgc 4
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgc 4
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgc 4
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 129
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 189 gtacctgcccgggcggccgc 208
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 21 acctgcccgggcggccgc 4
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 252
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 231 acctgcccgggcggccgc 248
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 418
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgc 5
>gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 275
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgc 5
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 322 acctgcccgggcggccgc 339
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 363 acctgcccgggcggccgc 380
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 309 acctgcccgggcggccgc 326
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 370
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 349 acctgcccgggcggccgc 366
>gb|CO512146.1|CO512146 s13dSG34D1200094_108612 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 167 tgaaaatgaaaatgaaaa 184
||||||||||||||||||
Sbjct: 29 tgaaaatgaaaatgaaaa 12
>gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 561
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1191 acctgcccgggcggccgc 1208
||||||||||||||||||
Sbjct: 538 acctgcccgggcggccgc 555
>emb|AX003695.1| Sequence 2 from Patent WO9925852
Length = 1231
Score = 36.2 bits (18), Expect = 0.056
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 759 tttggggccatgaacatgtggttttt 784
||||| |||||||| |||||||||||
Sbjct: 33 tttggagccatgaatatgtggttttt 8
>dbj|BD086096.1| Stress-tolerant gene
Length = 1231
Score = 36.2 bits (18), Expect = 0.056
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 759 tttggggccatgaacatgtggttttt 784
||||| |||||||| |||||||||||
Sbjct: 33 tttggagccatgaatatgtggttttt 8
>emb|X97606.1|MSRNAAAA M.sativa mRNA translated from abscisic activated gene
Length = 1231
Score = 36.2 bits (18), Expect = 0.056
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 759 tttggggccatgaacatgtggttttt 784
||||| |||||||| |||||||||||
Sbjct: 33 tttggagccatgaatatgtggttttt 8
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 340
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1192 cctgcccgggcggccgc 1208
|||||||||||||||||
Sbjct: 312 cctgcccgggcggccgc 328
>gb|CO513113.1|CO513113 s13dSG23A0600037_129390 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 168 gaaaatgaaaatgaaaa 184
|||||||||||||||||
Sbjct: 73 gaaaatgaaaatgaaaa 89
>gb|CO516964.1|CO516964 s13dSG81B0900075_468474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 469
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 168 gaaaatgaaaatgaaaa 184
|||||||||||||||||
Sbjct: 467 gaaaatgaaaatgaaaa 451
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4163
Number of Sequences: 7669
Number of extensions: 4163
Number of successful extensions: 930
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 43
length of query: 1208
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1192
effective length of database: 3,623,002
effective search space: 4318618384
effective search space used: 4318618384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)