BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3184970.2.1
(1043 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516915.1|CO516915 s13dSG58D0700060_468376 Glandular tr... 36 0.048
gb|DQ122835.1| Medicago sativa clone QF3 zinc finger Glo3-l... 36 0.048
gb|CO516206.1|CO516206 s13dSG67F0900079_445740 Glandular tr... 34 0.19
>gb|CO516915.1|CO516915 s13dSG58D0700060_468376 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 528
Score = 36.2 bits (18), Expect = 0.048
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgattt 90
||||||||||||||||||
Sbjct: 170 tttgatttgatttgattt 153
Score = 36.2 bits (18), Expect = 0.048
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgattt 90
||||||||||||||||||
Sbjct: 165 tttgatttgatttgattt 148
>gb|DQ122835.1| Medicago sativa clone QF3 zinc finger Glo3-like protein mRNA,
partial cds
Length = 658
Score = 36.2 bits (18), Expect = 0.048
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgattt 90
||||||||||||||||||
Sbjct: 145 tttgatttgatttgattt 128
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgatt 89
|||||||||||||||||
Sbjct: 140 tttgatttgatttgatt 124
>gb|CO516206.1|CO516206 s13dSG67F0900079_445740 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 539
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 71 attttgatttgatttgattta 91
||||| |||||||||||||||
Sbjct: 77 atttttatttgatttgattta 57
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1747
Number of Sequences: 7669
Number of extensions: 1747
Number of successful extensions: 523
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 7
length of query: 1043
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1027
effective length of database: 3,623,002
effective search space: 3720823054
effective search space used: 3720823054
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)