BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3183567.2.1
(681 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515476.1|CO515476 s13dSG52A0400033_418011 Glandular tr... 52 5e-007
gb|CO516293.1|CO516293 s13dSG69F0900077_445914 Glandular tr... 52 5e-007
gb|CO512077.1|CO512077 s13dSG18F0100011_108474 Glandular tr... 48 8e-006
gb|CO514897.1|CO514897 s13dSG56F1200103_328454 Glandular tr... 48 8e-006
gb|DQ122808.1| Medicago sativa clone P17 putative origin re... 36 0.031
>gb|CO515476.1|CO515476 s13dSG52A0400033_418011 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 52.0 bits (26), Expect = 5e-007
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 505 gtgtcgttcttggtgggcttccagttgcccacgaaggc 542
|||||||||||||| |||||||||||||| || |||||
Sbjct: 181 gtgtcgttcttggtaggcttccagttgccaacaaaggc 144
>gb|CO516293.1|CO516293 s13dSG69F0900077_445914 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 52.0 bits (26), Expect = 5e-007
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 505 gtgtcgttcttggtgggcttccagttgcccacgaaggc 542
|||||||||||||| |||||||||||||| || |||||
Sbjct: 193 gtgtcgttcttggtaggcttccagttgccaacaaaggc 156
>gb|CO512077.1|CO512077 s13dSG18F0100011_108474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 48.1 bits (24), Expect = 8e-006
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 451 tcgccgtagagtatgttcatggtggcgccgaacccaggcaggcgtttgctgagcgtgtcg 510
||||||||||| |||||||| || |||||||| ||||| | ||||| | ||||||
Sbjct: 203 tcgccgtagagaatgttcattgtagcgccgaaaccaggaacccgtttctccatagtgtcg 144
Query: 511 ttcttggtgggcttccagttgcccacgaaggc 542
||||| || |||||||||||||| || |||||
Sbjct: 143 ttcttagtaggcttccagttgccaacaaaggc 112
>gb|CO514897.1|CO514897 s13dSG56F1200103_328454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 510
Score = 48.1 bits (24), Expect = 8e-006
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 451 tcgccgtagagtatgttcatggtggcgccgaacccaggcaggcgtttgctgagcgtgtcg 510
||||||||||| |||||||| || |||||||| ||||| | ||||| | ||||||
Sbjct: 344 tcgccgtagagaatgttcattgtagcgccgaaaccaggaacccgtttctccatagtgtcg 285
Query: 511 ttcttggtgggcttccagttgcccacgaaggc 542
||||| || |||||||||||||| || |||||
Sbjct: 284 ttcttagtaggcttccagttgccaacaaaggc 253
>gb|DQ122808.1| Medicago sativa clone P17 putative origin recognition complex
subunit 6-containing protein mRNA, complete cds
Length = 427
Score = 36.2 bits (18), Expect = 0.031
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 70 aagaaaccaaaacagact 87
||||||||||||||||||
Sbjct: 291 aagaaaccaaaacagact 308
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1348
Number of Sequences: 7669
Number of extensions: 1348
Number of successful extensions: 310
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 13
length of query: 681
length of database: 3,745,706
effective HSP length: 16
effective length of query: 665
effective length of database: 3,623,002
effective search space: 2409296330
effective search space used: 2409296330
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)