BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115208.2.1
         (1469 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO514617.1|CO514617  s13dSG42H1100096_327894 Glandular tr...    36   0.068
gb|AF235958.2|AF235958  Medicago sativa heat shock transcrip...    34   0.27 
gb|AF494082.1|  Medicago sativa heat shock transcription fac...    34   0.27 
>gb|CO514617.1|CO514617 s13dSG42H1100096_327894 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 475

 Score = 36.2 bits (18), Expect = 0.068
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 438 atcaacatcacccgcaccatca 459
           |||||||||||| |||||||||
Sbjct: 242 atcaacatcaccagcaccatca 221
>gb|AF235958.2|AF235958 Medicago sativa heat shock transcription factor (HSFA4-6) mRNA,
            complete cds
          Length = 1979

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1138 aaaatcatcaaaaagaa 1154
            |||||||||||||||||
Sbjct: 252  aaaatcatcaaaaagaa 236
>gb|AF494082.1| Medicago sativa heat shock transcription factor (HSFA4) gene,
            complete cds
          Length = 2344

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1138 aaaatcatcaaaaagaa 1154
            |||||||||||||||||
Sbjct: 530  aaaatcatcaaaaagaa 514
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1539
Number of Sequences: 7669
Number of extensions: 1539
Number of successful extensions: 406
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 5
length of query: 1469
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1453
effective length of database: 3,623,002
effective search space: 5264221906
effective search space used: 5264221906
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)