BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115190.2.1
         (656 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO517261.1|CO517261  s13dSG32G0300024_486118 Glandular tr...    32   0.47 
gb|AF014375.1|AF014375  Medicago sativa putative JUN kinase ...    32   0.47 
gb|AF494082.1|  Medicago sativa heat shock transcription fac...    32   0.47 

>gb|CO517261.1|CO517261 s13dSG32G0300024_486118 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 529

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 54  attatatttattttta 69
           ||||||||||||||||
Sbjct: 247 attatatttattttta 232



>gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase activation domain binding protein
            mRNA, complete cds
          Length = 1321

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 4    tcgcggccgcgtcgac 19
            ||||||||||||||||
Sbjct: 1317 tcgcggccgcgtcgac 1302




 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 4  tcgcggccgcgtcgac 19
          ||||||||||||||||
Sbjct: 5  tcgcggccgcgtcgac 20



>gb|AF494082.1| Medicago sativa heat shock transcription factor (HSFA4) gene,
          complete cds
          Length = 2344

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 53 tattatatttattttt 68
          ||||||||||||||||
Sbjct: 16 tattatatttattttt 31



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1342
Number of Sequences: 7669
Number of extensions: 1342
Number of successful extensions: 271
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 4
length of query: 656
length of database: 3,745,706
effective HSP length: 16
effective length of query: 640
effective length of database: 3,623,002
effective search space: 2318721280
effective search space used: 2318721280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)