BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO517238.1|CO517238 s13dSG32D1000090_486072 Glandular tr... 36 0.046
gb|CO517323.1|CO517323 s13dSG45G0300024_486242 Glandular tr... 36 0.046
gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate sy... 36 0.046
gb|AY468362.2| Medicago sativa sucrose-phosphate synthase g... 36 0.046
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 34 0.18
gb|AY532173.1| Medicago sativa sucrose-phosphate synthase (... 34 0.18
>gb|CO517238.1|CO517238 s13dSG32D1000090_486072 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 645
Score = 36.2 bits (18), Expect = 0.046
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 600 gtatcctttgacaaacaa 617
||||||||||||||||||
Sbjct: 284 gtatcctttgacaaacaa 301
>gb|CO517323.1|CO517323 s13dSG45G0300024_486242 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 554
Score = 36.2 bits (18), Expect = 0.046
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 600 gtatcctttgacaaacaa 617
||||||||||||||||||
Sbjct: 193 gtatcctttgacaaacaa 210
>gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate synthase mRNA, complete cds
Length = 3579
Score = 36.2 bits (18), Expect = 0.046
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaaggact 502
||||||||||| ||||| ||||||||
Sbjct: 3098 tgtggtgacaccgattacgaaggact 3123
>gb|AY468362.2| Medicago sativa sucrose-phosphate synthase gene, promoter region and
complete cds
Length = 8933
Score = 36.2 bits (18), Expect = 0.046
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaaggact 502
||||||||||| ||||| ||||||||
Sbjct: 8489 tgtggtgacaccgattacgaaggact 8514
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 835 cttttgaaacttaaagg 851
|||||||||||||||||
Sbjct: 4177 cttttgaaacttaaagg 4193
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 835 cttttgaaacttaaagg 851
|||||||||||||||||
Sbjct: 3928 cttttgaaacttaaagg 3912
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 835 cttttgaaacttaaagg 851
|||||||||||||||||
Sbjct: 3899 cttttgaaacttaaagg 3883
>gb|AY532173.1| Medicago sativa sucrose-phosphate synthase (SPS) gene, promoter
region and partial cds
Length = 1257
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 835 cttttgaaacttaaagg 851
|||||||||||||||||
Sbjct: 818 cttttgaaacttaaagg 834
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2563
Number of Sequences: 7669
Number of extensions: 2563
Number of successful extensions: 1026
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 14
length of query: 1005
length of database: 3,745,706
effective HSP length: 16
effective length of query: 989
effective length of database: 3,623,002
effective search space: 3583148978
effective search space used: 3583148978
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)