BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071483.2.1
(531 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512947.1|CO512947 s13dSG86G0100004_121820 Glandular tr... 34 0.095
gb|CO515237.1|CO515237 s13dSG96C1100086_399339 Glandular tr... 32 0.38
gb|CO516172.1|CO516172 s13dSG67C0600050_445672 Glandular tr... 32 0.38
gb|CO516746.1|CO516746 s13dSG74H0400041_446820 Glandular tr... 32 0.38
>gb|CO512947.1|CO512947 s13dSG86G0100004_121820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 516
Score = 34.2 bits (17), Expect = 0.095
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 217 gtcttcatcagctaggg 233
|||||||||||||||||
Sbjct: 146 gtcttcatcagctaggg 130
>gb|CO515237.1|CO515237 s13dSG96C1100086_399339 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 503
Score = 32.2 bits (16), Expect = 0.38
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 71 cagtgatacaagcaagaggc 90
|||||||| |||||||||||
Sbjct: 502 cagtgatataagcaagaggc 483
>gb|CO516172.1|CO516172 s13dSG67C0600050_445672 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 531
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 218 tcttcatcagctaggg 233
||||||||||||||||
Sbjct: 472 tcttcatcagctaggg 457
>gb|CO516746.1|CO516746 s13dSG74H0400041_446820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 218 tcttcatcagctaggg 233
||||||||||||||||
Sbjct: 472 tcttcatcagctaggg 457
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1100
Number of Sequences: 7669
Number of extensions: 1100
Number of successful extensions: 530
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 8
length of query: 531
length of database: 3,745,706
effective HSP length: 16
effective length of query: 515
effective length of database: 3,623,002
effective search space: 1865846030
effective search space used: 1865846030
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)