BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3024030.2.1
         (412 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO514401.1|CO514401  s13dSG36B0500043_327462 Glandular tr...    40   0.001
gb|CO515001.1|CO515001  s13dSG26B0500045_397507 Glandular tr...    40   0.001
gb|CO512866.1|CO512866  s13dSG20F0700059_121658 Glandular tr...    38   0.005
emb|X03931.1|MSGLNAG  Medicago sativa L. glutamine synthetas...    38   0.005
gb|AJ410166.1|AJ410166  AJ410166 Medicago sativa library (Ka...    34   0.073
gb|CO513163.1|CO513163  s13dSG23F0200015_129490 Glandular tr...    34   0.073

>gb|CO514401.1|CO514401 s13dSG36B0500043_327462 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.001
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  caaaccaaaccaaaccaaac 34
           ||||||||||||||||||||
Sbjct: 82  caaaccaaaccaaaccaaac 101




 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  caaaccaaaccaaaccaaa 38
           |||||||||||||||||||
Sbjct: 82  caaaccaaaccaaaccaaa 100



>gb|CO515001.1|CO515001 s13dSG26B0500045_397507 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 473

 Score = 40.1 bits (20), Expect = 0.001
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  caaaccaaaccaaaccaaac 34
           ||||||||||||||||||||
Sbjct: 82  caaaccaaaccaaaccaaac 101




 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  caaaccaaaccaaaccaaa 38
           |||||||||||||||||||
Sbjct: 82  caaaccaaaccaaaccaaa 100



>gb|CO512866.1|CO512866 s13dSG20F0700059_121658 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 597

 Score = 38.2 bits (19), Expect = 0.005
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 16  aaaccaaaccaaaccaaaccaaa 38
           |||||||||||||||||| ||||
Sbjct: 195 aaaccaaaccaaaccaaatcaaa 217



>emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetase gene
          Length = 4464

 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   accaaaccaaaccaaacca 36
            |||||||||||||||||||
Sbjct: 1414 accaaaccaaaccaaacca 1432




 Score = 34.2 bits (17), Expect = 0.073
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 15   caaaccaaaccaaacca 31
            |||||||||||||||||
Sbjct: 1416 caaaccaaaccaaacca 1432




 Score = 32.2 bits (16), Expect = 0.29
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 23   accaaaccaaaccaaa 38
            ||||||||||||||||
Sbjct: 1414 accaaaccaaaccaaa 1429



>gb|AJ410166.1|AJ410166 AJ410166 Medicago sativa library (Kalo P) Medicago sativa cDNA
           clone U9, mRNA sequence
          Length = 703

 Score = 34.2 bits (17), Expect = 0.073
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 127 tgaccaccatgacctcc 143
           |||||||||||||||||
Sbjct: 430 tgaccaccatgacctcc 414



>gb|CO513163.1|CO513163 s13dSG23F0200015_129490 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 571

 Score = 34.2 bits (17), Expect = 0.073
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 186 gcagcaagtagagaaga 202
           |||||||||||||||||
Sbjct: 43  gcagcaagtagagaaga 59



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 939
Number of Sequences: 7669
Number of extensions: 939
Number of successful extensions: 295
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 13
length of query: 412
length of database: 3,745,706
effective HSP length: 15
effective length of query: 397
effective length of database: 3,630,671
effective search space: 1441376387
effective search space used: 1441376387
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)