BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410157.1|AJ410157 AJ410157 Medicago sativa library (Ka... 36 0.050
gb|CO512437.1|CO512437 s13dSG80H0600048_114388 Glandular tr... 34 0.20
gb|CO516171.1|CO516171 s13dSG67C0500036_445670 Glandular tr... 34 0.20
>gb|AJ410157.1|AJ410157 AJ410157 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U80, mRNA sequence
Length = 413
Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 488 tgaagaagctgaaaagga 505
||||||||||||||||||
Sbjct: 255 tgaagaagctgaaaagga 272
>gb|CO512437.1|CO512437 s13dSG80H0600048_114388 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 942 taagttacccaaaaatt 958
|||||||||||||||||
Sbjct: 415 taagttacccaaaaatt 399
>gb|CO516171.1|CO516171 s13dSG67C0500036_445670 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 453
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 942 taagttacccaaaaatt 958
|||||||||||||||||
Sbjct: 416 taagttacccaaaaatt 400
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2746
Number of Sequences: 7669
Number of extensions: 2746
Number of successful extensions: 829
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 5
length of query: 1094
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1078
effective length of database: 3,623,002
effective search space: 3905596156
effective search space used: 3905596156
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)