BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410120.1|AJ410120 AJ410120 Medicago sativa library (Ka... 105 4e-023
gb|CO513482.1|CO513482 s13dSG10G1000072_130128 Glandular tr... 34 0.12
gb|CO515623.1|CO515623 s13dSG47G0600052_418305 Glandular tr... 34 0.12
gb|CO516528.1|CO516528 s13dSG57B0600046_446384 Glandular tr... 32 0.48
gb|CO516564.1|CO516564 s13dSG57F0300027_446456 Glandular tr... 32 0.48
>gb|AJ410120.1|AJ410120 AJ410120 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U40, mRNA sequence
Length = 757
Score = 105 bits (53), Expect = 4e-023
Identities = 233/289 (80%), Gaps = 3/289 (1%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| ||| ||||| || || || ||||||||||| || || || ||
Sbjct: 150 gaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaaaacaac 209
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||||| ||||| || || |||||||| ||| | || || || || | || ||
Sbjct: 210 acacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagggctttt 269
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||| | |||||||| ||||||||||| || || |||| |||||||| ||||| || |||
Sbjct: 270 gatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtgcctaag 329
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaagga-caggttcataagcaagat 355
|| |||||||| ||||||||||||| || || |||||||| | | ||||| ||||| ||
Sbjct: 330 actggtaaaggaaagaagaaggctcagccagtcaacaaggatccgtttcatcagcaaaat 389
Query: 356 gttcc-tccgtggggattcggtcatcattg-tcctcaggaacccgaaat 402
||||| ||||||| ||||| |||||||||| |||| |||||||| ||||
Sbjct: 390 gttccttccgtggagattctgtcatcattgttccttaggaaccccaaat 438
>gb|CO513482.1|CO513482 s13dSG10G1000072_130128 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 609
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 33 gacgcgccgccgccgtc 49
|||||||||||||||||
Sbjct: 292 gacgcgccgccgccgtc 276
>gb|CO515623.1|CO515623 s13dSG47G0600052_418305 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 513 gccatgggattcagctt 529
|||||||||||||||||
Sbjct: 523 gccatgggattcagctt 507
>gb|CO516528.1|CO516528 s13dSG57B0600046_446384 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 119
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 aaaggaggaagaggag 128
||||||||||||||||
Sbjct: 53 aaaggaggaagaggag 68
>gb|CO516564.1|CO516564 s13dSG57F0300027_446456 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 505
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 518 gggattcagcttaaga 533
||||||||||||||||
Sbjct: 1 gggattcagcttaaga 16
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1057
Number of Sequences: 7669
Number of extensions: 1057
Number of successful extensions: 299
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 6
length of query: 675
length of database: 3,745,706
effective HSP length: 16
effective length of query: 659
effective length of database: 3,623,002
effective search space: 2387558318
effective search space used: 2387558318
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)