BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2 40 0.003
gb|AJ410110.1|AJ410110 AJ410110 Medicago sativa library (Ka... 36 0.040
>emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2
Length = 1193
Score = 40.1 bits (20), Expect = 0.003
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 841 gtgccgaat-cctgcagcccgggggatc 867
||||||||| ||||||||||||||||||
Sbjct: 62 gtgccgaattcctgcagcccgggggatc 35
>gb|AJ410110.1|AJ410110 AJ410110 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U281, mRNA sequence
Length = 754
Score = 36.2 bits (18), Expect = 0.040
Identities = 28/30 (93%), Gaps = 1/30 (3%)
Strand = Plus / Minus
Query: 835 aacctggtgccgaat-cctgcagcccgggg 863
||||| ||||||||| ||||||||||||||
Sbjct: 59 aacctcgtgccgaattcctgcagcccgggg 30
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1854
Number of Sequences: 7669
Number of extensions: 1854
Number of successful extensions: 522
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 2
length of query: 867
length of database: 3,745,706
effective HSP length: 16
effective length of query: 851
effective length of database: 3,623,002
effective search space: 3083174702
effective search space used: 3083174702
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)