BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Ka... 52 5e-007
>gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U380, mRNA sequence
Length = 672
Score = 52.0 bits (26), Expect = 5e-007
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| ||||||||||||||||||||| | | ||||| |||||||||||
Sbjct: 302 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 351
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1010
Number of Sequences: 7669
Number of extensions: 1010
Number of successful extensions: 287
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 2
length of query: 658
length of database: 3,745,706
effective HSP length: 16
effective length of query: 642
effective length of database: 3,623,002
effective search space: 2325967284
effective search space used: 2325967284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)