BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943819.2.1
(1121 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512213.1|CO512213 s13dSG03D0100010_113940 Glandular tr... 34 0.20
gb|CO512958.1|CO512958 s13dSG86H0200016_121842 Glandular tr... 34 0.20
gb|CO515122.1|CO515122 s13dSG40E0500039_399109 Glandular tr... 34 0.20
gb|CO516509.1|CO516509 s13dSG28H0500045_446346 Glandular tr... 34 0.20
>gb|CO512213.1|CO512213 s13dSG03D0100010_113940 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 660 gcttctgctgctgctgc 676
|||||||||||||||||
Sbjct: 81 gcttctgctgctgctgc 97
>gb|CO512958.1|CO512958 s13dSG86H0200016_121842 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 34.2 bits (17), Expect = 0.20
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 421 cgttgctgctgctgcagctgc 441
||||||||||||||| |||||
Sbjct: 24 cgttgctgctgctgctgctgc 44
>gb|CO515122.1|CO515122 s13dSG40E0500039_399109 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 329
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 660 gcttctgctgctgctgc 676
|||||||||||||||||
Sbjct: 210 gcttctgctgctgctgc 226
>gb|CO516509.1|CO516509 s13dSG28H0500045_446346 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 34.2 bits (17), Expect = 0.20
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 424 tgctgctgctgcagctgcacc 444
|||||||||||| ||||||||
Sbjct: 306 tgctgctgctgctgctgcacc 326
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1807
Number of Sequences: 7669
Number of extensions: 1807
Number of successful extensions: 664
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 16
length of query: 1121
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1105
effective length of database: 3,623,002
effective search space: 4003417210
effective search space used: 4003417210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)