BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2907809.2.1
         (614 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ410139.1|AJ410139  AJ410139 Medicago sativa library (Ka...    44   1e-004
gb|CO515737.1|CO515737  s13dSG77C0400034_419623 Glandular tr...    44   1e-004
gb|CO514107.1|CO514107  s13dSG75D0400030_156876 Glandular tr...    36   0.028
gb|CO515466.1|CO515466  s13dSG51E0300023_417991 Glandular tr...    36   0.028
gb|CO514789.1|CO514789  s13dSG59C0300022_328238 Glandular tr...    32   0.44 
gb|CO516543.1|CO516543  s13dSG57C1100084_446414 Glandular tr...    32   0.44 
>gb|AJ410139.1|AJ410139 AJ410139 Medicago sativa library (Kalo P) Medicago sativa cDNA
           clone U594, mRNA sequence
          Length = 510

 Score = 44.1 bits (22), Expect = 1e-004
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                       
Query: 232 atccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaa 291
           |||||||||||| | |||||||| || || ||||||||||| || || |  |||||||| 
Sbjct: 172 atccagtgcaaggtgtgcatgcaaacatttatctgcaccacatcagaagtgaagtgcaag 231

                         
Query: 292 gaacatgcggaggc 305
           || ||||| |||||
Sbjct: 232 gagcatgctgaggc 245

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
           |||||||| ||||||||||||  |||||||
Sbjct: 88  aagatggctcgcgagaggaacctcgagaag 117
>gb|CO515737.1|CO515737 s13dSG77C0400034_419623 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 541

 Score = 44.1 bits (22), Expect = 1e-004
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                       
Query: 232 atccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaa 291
           |||||||||||| | |||||||| || || ||||||||||| || || |  |||||||| 
Sbjct: 193 atccagtgcaaggtgtgcatgcaaacatttatctgcaccacatcagaagtgaagtgcaag 252

                         
Query: 292 gaacatgcggaggc 305
           || ||||| |||||
Sbjct: 253 gagcatgctgaggc 266

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
           |||||||| ||||||||||||  |||||||
Sbjct: 109 aagatggctcgcgagaggaacctcgagaag 138
>gb|CO514107.1|CO514107 s13dSG75D0400030_156876 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 454

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 60/74 (81%)
 Strand = Plus / Plus

                                                                       
Query: 232 atccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaa 291
           ||||||||| || | |||||||| || || ||||||||||| || || |  |||||||| 
Sbjct: 173 atccagtgcgaggtgtgcatgcaaacatttatctgcaccacatcagaagtgaagtgcaag 232

                         
Query: 292 gaacatgcggaggc 305
           || ||||| |||||
Sbjct: 233 gagcatgctgaggc 246

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
           |||||||| ||||||||||||  |||||||
Sbjct: 89  aagatggctcgcgagaggaacctcgagaag 118
>gb|CO515466.1|CO515466 s13dSG51E0300023_417991 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 228

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
           |||||||| ||||||||||||  |||||||
Sbjct: 110 aagatggctcgcgagaggaacctcgagaag 139
>gb|CO514789.1|CO514789 s13dSG59C0300022_328238 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 494

 Score = 32.2 bits (16), Expect = 0.44
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 44  cgccgcccgcactaccacgc 63
           ||||||| ||||||||||||
Sbjct: 237 cgccgccggcactaccacgc 256
>gb|CO516543.1|CO516543 s13dSG57C1100084_446414 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 526

 Score = 32.2 bits (16), Expect = 0.44
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 363 agcagaagcatatgct 378
           ||||||||||||||||
Sbjct: 508 agcagaagcatatgct 523
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1169
Number of Sequences: 7669
Number of extensions: 1169
Number of successful extensions: 379
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 10
length of query: 614
length of database: 3,745,706
effective HSP length: 16
effective length of query: 598
effective length of database: 3,623,002
effective search space: 2166555196
effective search space used: 2166555196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)