BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2907809.2.1
(614 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410139.1|AJ410139 AJ410139 Medicago sativa library (Ka... 44 1e-004
gb|CO515737.1|CO515737 s13dSG77C0400034_419623 Glandular tr... 44 1e-004
gb|CO514107.1|CO514107 s13dSG75D0400030_156876 Glandular tr... 36 0.028
gb|CO515466.1|CO515466 s13dSG51E0300023_417991 Glandular tr... 36 0.028
gb|CO514789.1|CO514789 s13dSG59C0300022_328238 Glandular tr... 32 0.44
gb|CO516543.1|CO516543 s13dSG57C1100084_446414 Glandular tr... 32 0.44
>gb|AJ410139.1|AJ410139 AJ410139 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U594, mRNA sequence
Length = 510
Score = 44.1 bits (22), Expect = 1e-004
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 232 atccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaa 291
|||||||||||| | |||||||| || || ||||||||||| || || | ||||||||
Sbjct: 172 atccagtgcaaggtgtgcatgcaaacatttatctgcaccacatcagaagtgaagtgcaag 231
Query: 292 gaacatgcggaggc 305
|| ||||| |||||
Sbjct: 232 gagcatgctgaggc 245
Score = 36.2 bits (18), Expect = 0.028
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
|||||||| |||||||||||| |||||||
Sbjct: 88 aagatggctcgcgagaggaacctcgagaag 117
>gb|CO515737.1|CO515737 s13dSG77C0400034_419623 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 541
Score = 44.1 bits (22), Expect = 1e-004
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 232 atccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaa 291
|||||||||||| | |||||||| || || ||||||||||| || || | ||||||||
Sbjct: 193 atccagtgcaaggtgtgcatgcaaacatttatctgcaccacatcagaagtgaagtgcaag 252
Query: 292 gaacatgcggaggc 305
|| ||||| |||||
Sbjct: 253 gagcatgctgaggc 266
Score = 36.2 bits (18), Expect = 0.028
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
|||||||| |||||||||||| |||||||
Sbjct: 109 aagatggctcgcgagaggaacctcgagaag 138
>gb|CO514107.1|CO514107 s13dSG75D0400030_156876 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 454
Score = 36.2 bits (18), Expect = 0.028
Identities = 60/74 (81%)
Strand = Plus / Plus
Query: 232 atccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaa 291
||||||||| || | |||||||| || || ||||||||||| || || | ||||||||
Sbjct: 173 atccagtgcgaggtgtgcatgcaaacatttatctgcaccacatcagaagtgaagtgcaag 232
Query: 292 gaacatgcggaggc 305
|| ||||| |||||
Sbjct: 233 gagcatgctgaggc 246
Score = 36.2 bits (18), Expect = 0.028
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
|||||||| |||||||||||| |||||||
Sbjct: 89 aagatggctcgcgagaggaacctcgagaag 118
>gb|CO515466.1|CO515466 s13dSG51E0300023_417991 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 228
Score = 36.2 bits (18), Expect = 0.028
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 151 aagatggcgcgcgagaggaacgccgagaag 180
|||||||| |||||||||||| |||||||
Sbjct: 110 aagatggctcgcgagaggaacctcgagaag 139
>gb|CO514789.1|CO514789 s13dSG59C0300022_328238 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 32.2 bits (16), Expect = 0.44
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 44 cgccgcccgcactaccacgc 63
||||||| ||||||||||||
Sbjct: 237 cgccgccggcactaccacgc 256
>gb|CO516543.1|CO516543 s13dSG57C1100084_446414 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 363 agcagaagcatatgct 378
||||||||||||||||
Sbjct: 508 agcagaagcatatgct 523
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1169
Number of Sequences: 7669
Number of extensions: 1169
Number of successful extensions: 379
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 10
length of query: 614
length of database: 3,745,706
effective HSP length: 16
effective length of query: 598
effective length of database: 3,623,002
effective search space: 2166555196
effective search space used: 2166555196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)