BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750995.2.1
(729 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516976.1|CO516976 s13dSG81D0100010_468498 Glandular tr... 52 6e-007
>gb|CO516976.1|CO516976 s13dSG81D0100010_468498 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 299
Score = 52.0 bits (26), Expect = 6e-007
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||| || ||||| || ||||| ||||| ||||| ||||| |||||||| |||
Sbjct: 81 atggtgaagatttgttgcattggagctggttatgttggtggtccaacaatggctgtgatt 140
Query: 261 gc 262
||
Sbjct: 141 gc 142
Score = 42.1 bits (21), Expect = 5e-004
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 363 gatgatgttgtgaagcagtgcaggggcaggaacctcttcttcagcactgatgttgag 419
|||||||| |||||| |||||| || | ||| || |||||||||||||| ||||||
Sbjct: 243 gatgatgtggtgaagaagtgcacaggaaagaatcttttcttcagcactgacgttgag 299
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 989
Number of Sequences: 7669
Number of extensions: 989
Number of successful extensions: 250
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 2
length of query: 729
length of database: 3,745,706
effective HSP length: 16
effective length of query: 713
effective length of database: 3,623,002
effective search space: 2583200426
effective search space used: 2583200426
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)