BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA... 38 0.007
emb|AX774637.1| Sequence 2 from Patent WO03035856 38 0.007
gb|CO511703.1|CO511703 s13dSG01B0400041_103306 Glandular tr... 34 0.10
gb|CO515842.1|CO515842 s13dSG54F1100093_421223 Glandular tr... 34 0.10
>gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA, complete cds
Length = 1850
Score = 38.2 bits (19), Expect = 0.007
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 292 ctcactcactcactcactc 274
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcac 91
|||||||||||||||||
Sbjct: 288 ctcactcactcactcac 272
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 actcactcactcactc 93
||||||||||||||||
Sbjct: 293 actcactcactcactc 278
>emb|AX774637.1| Sequence 2 from Patent WO03035856
Length = 1866
Score = 38.2 bits (19), Expect = 0.007
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 292 ctcactcactcactcactc 274
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcac 91
|||||||||||||||||
Sbjct: 288 ctcactcactcactcac 272
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 actcactcactcactc 93
||||||||||||||||
Sbjct: 293 actcactcactcactc 278
>gb|CO511703.1|CO511703 s13dSG01B0400041_103306 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 445
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 77 cactcactcactcactc 93
|||||||||||||||||
Sbjct: 62 cactcactcactcactc 46
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcac 91
|||||||||||||||||
Sbjct: 60 ctcactcactcactcac 44
>gb|CO515842.1|CO515842 s13dSG54F1100093_421223 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 564
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 78 actcactcactcactcc 94
|||||||||||||||||
Sbjct: 110 actcactcactcactcc 126
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1145
Number of Sequences: 7669
Number of extensions: 1145
Number of successful extensions: 349
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 13
length of query: 583
length of database: 3,745,706
effective HSP length: 16
effective length of query: 567
effective length of database: 3,623,002
effective search space: 2054242134
effective search space used: 2054242134
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)