BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750560.2.1
         (660 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO516703.1|CO516703  s13dSG74D0100010_446734 Glandular tr...    34   0.12 
gb|AF439380.1|  Medicago sativa retrotransposon polyprotein ...    32   0.47 

>gb|CO516703.1|CO516703 s13dSG74D0100010_446734 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 399

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 462 agagctgaaactgattc 478
           |||||||||||||||||
Sbjct: 122 agagctgaaactgattc 106



>gb|AF439380.1| Medicago sativa retrotransposon polyprotein gene interrupted by LTR
             retroelement MCIRE, complete sequence
          Length = 18789

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                 
Query: 467   tgaaactgattctgatgaag 486
             |||||||| |||||||||||
Sbjct: 15310 tgaaactgcttctgatgaag 15329



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1136
Number of Sequences: 7669
Number of extensions: 1136
Number of successful extensions: 341
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 3
length of query: 660
length of database: 3,745,706
effective HSP length: 16
effective length of query: 644
effective length of database: 3,623,002
effective search space: 2333213288
effective search space used: 2333213288
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)