BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511689.1|CO511689 s13dSG01A0200017_103278 Glandular tr... 32 0.41
gb|CO511901.1|CO511901 s13dSG05D0100014_103702 Glandular tr... 32 0.41
gb|CO512030.1|CO512030 s13dSG18A0600037_108380 Glandular tr... 32 0.41
gb|CO512732.1|CO512732 s13dSG88A0300017_121390 Glandular tr... 32 0.41
gb|CO513624.1|CO513624 s13dSG16G0700052_140030 Glandular tr... 32 0.41
gb|CO514629.1|CO514629 s13dSG46B0400041_327918 Glandular tr... 32 0.41
gb|CO515783.1|CO515783 s13dSG77H0300032_419715 Glandular tr... 32 0.41
>gb|CO511689.1|CO511689 s13dSG01A0200017_103278 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 304 acagctggattatcag 319
>gb|CO511901.1|CO511901 s13dSG05D0100014_103702 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 421
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 299 acagctggattatcag 314
>gb|CO512030.1|CO512030 s13dSG18A0600037_108380 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 304 acagctggattatcag 319
>gb|CO512732.1|CO512732 s13dSG88A0300017_121390 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 554
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 304 acagctggattatcag 319
>gb|CO513624.1|CO513624 s13dSG16G0700052_140030 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 303 acagctggattatcag 318
>gb|CO514629.1|CO514629 s13dSG46B0400041_327918 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 304 acagctggattatcag 319
>gb|CO515783.1|CO515783 s13dSG77H0300032_419715 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 acagctggattatcag 494
||||||||||||||||
Sbjct: 304 acagctggattatcag 319
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1411
Number of Sequences: 7669
Number of extensions: 1411
Number of successful extensions: 663
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 7
length of query: 578
length of database: 3,745,706
effective HSP length: 16
effective length of query: 562
effective length of database: 3,623,002
effective search space: 2036127124
effective search space used: 2036127124
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)