BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2623104.2.3
         (1540 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF014375.1|AF014375  Medicago sativa putative JUN kinase ...    40   0.005
gb|CO514876.1|CO514876  s13dSG56D0700062_328412 Glandular tr...    36   0.071

>gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase activation domain binding protein
            mRNA, complete cds
          Length = 1321

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1514 gtcgacgcggccgcgaattc 1533
            ||||||||||||||||||||
Sbjct: 1302 gtcgacgcggccgcgaattc 1321




 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1514 gtcgacgcggccgcgaattc 1533
            ||||||||||||||||||||
Sbjct: 20   gtcgacgcggccgcgaattc 1



>gb|CO514876.1|CO514876 s13dSG56D0700062_328412 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 553

 Score = 36.2 bits (18), Expect = 0.071
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 100 gaaggcaaagtcaaagga 117
           ||||||||||||||||||
Sbjct: 302 gaaggcaaagtcaaagga 319



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2501
Number of Sequences: 7669
Number of extensions: 2501
Number of successful extensions: 656
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 3
length of query: 1540
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1524
effective length of database: 3,623,002
effective search space: 5521455048
effective search space used: 5521455048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)