BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521589.2.1
(1689 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515318.1|CO515318 s13dSG48E0800067_417695 Glandular tr... 72 1e-012
gb|L11046.1|ALFEICA4HA Medicago sativa elicitor-inducible c... 64 3e-010
>gb|CO515318.1|CO515318 s13dSG48E0800067_417695 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 71.9 bits (36), Expect = 1e-012
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| |||||||| || ||||||||||| | ||||| || ||||| || ||||||
Sbjct: 287 accttgtttgtgaagaacggaacggtcatgattctacgcattttacgccaatgttcgccg 228
Query: 1320 tacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| || |||||||||||||| || || || | |||||||||||||| || |||||
Sbjct: 227 tagacagtgaacaccatgtcttgtcctttacttgtgaagatgtcgaaaactacgtt 172
>gb|L11046.1|ALFEICA4HA Medicago sativa elicitor-inducible cinnamic acid 4-hydroxylase mRNA,
complete cds
Length = 1744
Score = 63.9 bits (32), Expect = 3e-010
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| |||||||| || ||||||||||| | ||||| || ||||| || ||||||
Sbjct: 454 accttgtttgtgaagaaaggaacggtcatgattctgcgcattttacgccaatgttcgccg 395
Query: 1320 tacaccgtgaacaccatgtc 1339
|| || ||||||||||||||
Sbjct: 394 tagacagtgaacaccatgtc 375
Score = 42.1 bits (21), Expect = 0.001
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 721 ggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||||| ||||| || || ||||| || || ||||| ||||| || || || || |
Sbjct: 1008 ggtggttcactagctcagcaattccccattcaattgaccatagtgttgtttcaattgcag 949
Query: 781 cgacgttgatgttctcgacgatgtagaggacgttgtc 817
| || ||||||||||| || ||||| || ||||||||
Sbjct: 948 caacattgatgttctcaacaatgtaaagaacgttgtc 912
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2182
Number of Sequences: 7669
Number of extensions: 2182
Number of successful extensions: 606
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 4
length of query: 1689
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1673
effective length of database: 3,623,002
effective search space: 6061282346
effective search space used: 6061282346
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)