BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493535.2.1
         (580 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|X59441.1|MSEIF4DMR  M.sativa mRNA for eIF-4D                   32   0.41 
emb|X82040.1|MVCYCMS2  M.varia mRNA for mitotic cyclin 2           32   0.41 
emb|X68741.1|MSCYCMS2  M.sativa CYCMS2 mRNA for cyclin             32   0.41 

>emb|X59441.1|MSEIF4DMR M.sativa mRNA for eIF-4D
          Length = 741

 Score = 32.2 bits (16), Expect = 0.41
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 401 cgcctccgccaccgccaccg 420
           |||| |||||||||||||||
Sbjct: 82  cgccaccgccaccgccaccg 101




 Score = 32.2 bits (16), Expect = 0.41
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 401 cgcctccgccaccgccaccg 420
           |||| |||||||||||||||
Sbjct: 76  cgccaccgccaccgccaccg 95



>emb|X82040.1|MVCYCMS2 M.varia mRNA for mitotic cyclin 2
          Length = 1758

 Score = 32.2 bits (16), Expect = 0.41
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 435  gacagcagcagcagca 450
            ||||||||||||||||
Sbjct: 1165 gacagcagcagcagca 1150



>emb|X68741.1|MSCYCMS2 M.sativa CYCMS2 mRNA for cyclin
          Length = 1343

 Score = 32.2 bits (16), Expect = 0.41
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 435 gacagcagcagcagca 450
           ||||||||||||||||
Sbjct: 750 gacagcagcagcagca 735



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 999
Number of Sequences: 7669
Number of extensions: 999
Number of successful extensions: 343
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 5
length of query: 580
length of database: 3,745,706
effective HSP length: 16
effective length of query: 564
effective length of database: 3,623,002
effective search space: 2043373128
effective search space used: 2043373128
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)