BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512463.1|CO512463 s13dSG100C080005_114440 Glandular tr... 32 0.49
gb|AJ966538.1|AJ966538 AJ966538 Medicago sativa subsp. falc... 32 0.49
gb|DQ222911.1| Medicago sativa ferulate 5-hydroxylase (F5H-... 32 0.49
gb|DQ222912.1| Medicago sativa ferulate 5-hydroxylase (F5H-... 32 0.49
>gb|CO512463.1|CO512463 s13dSG100C080005_114440 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 655 ggtgaagaagccgccc 670
||||||||||||||||
Sbjct: 16 ggtgaagaagccgccc 31
>gb|AJ966538.1|AJ966538 AJ966538 Medicago sativa subsp. falcata flower buds Medicago sativa
subsp. falcata cDNA clone Em43, mRNA sequence
Length = 198
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 239 tccattgatgatggtg 254
||||||||||||||||
Sbjct: 104 tccattgatgatggtg 119
>gb|DQ222911.1| Medicago sativa ferulate 5-hydroxylase (F5H-K1) mRNA, complete cds
Length = 1904
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 aatctgttagagacga 152
||||||||||||||||
Sbjct: 560 aatctgttagagacga 575
>gb|DQ222912.1| Medicago sativa ferulate 5-hydroxylase (F5H-K10) mRNA, complete cds
Length = 1885
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 aatctgttagagacga 152
||||||||||||||||
Sbjct: 546 aatctgttagagacga 561
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1185
Number of Sequences: 7669
Number of extensions: 1185
Number of successful extensions: 351
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 4
length of query: 694
length of database: 3,745,706
effective HSP length: 16
effective length of query: 678
effective length of database: 3,623,002
effective search space: 2456395356
effective search space used: 2456395356
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)