BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2455828.2.1
         (1565 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO513349.1|CO513349  s13dSG37H1200096_129862 Glandular tr...    40   0.005
gb|CO514286.1|CO514286  s13dSG76F0900075_157234 Glandular tr...    36   0.072
gb|CO513914.1|CO513914  s13dSG71B0100009_156490 Glandular tr...    34   0.29 
emb|X59441.1|MSEIF4DMR  M.sativa mRNA for eIF-4D                   34   0.29 
gb|DQ122793.1|  Medicago sativa clone KC8 unknown mRNA             34   0.29 

>gb|CO513349.1|CO513349 s13dSG37H1200096_129862 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 581

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 961 ttccaccaccgccaccgccaccac 984
           |||||||||| |||||||||||||
Sbjct: 312 ttccaccaccaccaccgccaccac 289



>gb|CO514286.1|CO514286 s13dSG76F0900075_157234 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 503

 Score = 36.2 bits (18), Expect = 0.072
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1090 atcttttttgttcatcct 1107
            ||||||||||||||||||
Sbjct: 404  atcttttttgttcatcct 387



>gb|CO513914.1|CO513914 s13dSG71B0100009_156490 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 594

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 970 cgccaccgccaccacca 986
           |||||||||||||||||
Sbjct: 237 cgccaccgccaccacca 253



>emb|X59441.1|MSEIF4DMR M.sativa mRNA for eIF-4D
          Length = 741

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 966 ccaccgccaccgccacc 982
           |||||||||||||||||
Sbjct: 84  ccaccgccaccgccacc 100




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 966 ccaccgccaccgccacc 982
           |||||||||||||||||
Sbjct: 78  ccaccgccaccgccacc 94



>gb|DQ122793.1| Medicago sativa clone KC8 unknown mRNA
          Length = 514

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 186 gccttggcgtccttctc 202
           |||||||||||||||||
Sbjct: 179 gccttggcgtccttctc 163



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3325
Number of Sequences: 7669
Number of extensions: 3325
Number of successful extensions: 984
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 9
length of query: 1565
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1549
effective length of database: 3,623,002
effective search space: 5612030098
effective search space used: 5612030098
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)