BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441373.2.3
(986 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516690.1|CO516690 s13dSG74B1200101_446708 Glandular tr... 323 1e-088
emb|X52398.1|MSCAL1 Alfalfa cal1 mRNA for calmodulin 323 1e-088
gb|CO512626.1|CO512626 s13dSG13E0500035_121178 Glandular tr... 315 3e-086
gb|CO515666.1|CO515666 s13dSG60D0300030_419481 Glandular tr... 303 1e-082
gb|CO516761.1|CO516761 s13dSG94B0100009_446850 Glandular tr... 234 1e-061
gb|CO514921.1|CO514921 s13dSG63A1100085_397347 Glandular tr... 216 2e-056
gb|CO512627.1|CO512627 s13dSG13E0600039_121180 Glandular tr... 192 3e-049
gb|CO515133.1|CO515133 s13dSG40G0300024_399131 Glandular tr... 184 8e-047
gb|CO515130.1|CO515130 s13dSG40F1000091_399125 Glandular tr... 168 5e-042
gb|CO515091.1|CO515091 s13dSG40A0900069_399047 Glandular tr... 153 3e-037
gb|CO514272.1|CO514272 s13dSG76E0600039_157206 Glandular tr... 101 9e-022
gb|CO513513.1|CO513513 s13dSG12C0700050_139808 Glandular tr... 70 3e-012
gb|CO514579.1|CO514579 s13dSG42D0900078_327818 Glandular tr... 34 0.18
gb|CO516520.1|CO516520 s13dSG57A0900067_446368 Glandular tr... 34 0.18
gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase ... 34 0.18
>gb|CO516690.1|CO516690 s13dSG74B1200101_446708 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 323 bits (163), Expect = 1e-088
Identities = 382/455 (83%)
Strand = Plus / Plus
Query: 205 ctcccatggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcc 264
|||| ||||| || |||||||||||||| |||||| | ||||| ||||| || |||||||
Sbjct: 81 ctccaatggccgatcaactcaccgacgagcagatctctgagtttaaggaagctttcagcc 140
Query: 265 tcttcgacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgtt 324
| ||||| ||||| || |||||||| || || ||||||||||| || ||||| ||| | |
Sbjct: 141 tattcgataaggatggcgatggttgtattactaccaaggagctcgggactgtgatgaggt 200
Query: 325 cactggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccg 384
| || || || ||||| || |||||||| | |||||||||||||| ||||| ||||| |
Sbjct: 201 cgctaggccagaacccaactgaggctgaattgcaggacatgatcaacgaggttgatgctg 260
Query: 385 atggcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaagg 444
|||| ||||| ||||| ||||| || || || || ||||| ||||| |||||||||||||
Sbjct: 261 atggaaacggtaccattgatttccctgaattccttaacctgatggcccgcaagatgaagg 320
Query: 445 acaccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacg 504
| || || || ||||||||||||||||| || || ||||||||||||||||| || || |
Sbjct: 321 atactgattccgaggaagagctcaaggaagctttccgtgtgtttgacaaggatcaaaatg 380
Query: 505 gcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaactg 564
| |||||||| || || |||||||| ||||||||||||||||| || |||||||| ||||
Sbjct: 381 gtttcatctctgcagctgagctccgtcatgtcatgacaaatctcggagagaagctgactg 440
Query: 565 atgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaact 624
|||| || || ||||||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 441 atgaagaagttgacgagatgattcgcgaggctgatgttgatggtgatgggcagatcaact 500
Query: 625 acgaggagtttgttaaggtcatgatggccaagtga 659
| ||||||||||| || ||||||||||| ||||||
Sbjct: 501 atgaggagtttgtcaaagtcatgatggctaagtga 535
>emb|X52398.1|MSCAL1 Alfalfa cal1 mRNA for calmodulin
Length = 807
Score = 323 bits (163), Expect = 1e-088
Identities = 382/455 (83%)
Strand = Plus / Plus
Query: 205 ctcccatggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcc 264
|||| ||||| || |||||||||||||| |||||| | ||||| ||||| || |||||||
Sbjct: 43 ctccaatggccgatcaactcaccgacgagcagatctctgagtttaaggaagctttcagcc 102
Query: 265 tcttcgacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgtt 324
| ||||| ||||| || |||||||| || || ||||||||||| || ||||| ||| | |
Sbjct: 103 tattcgataaggatggcgatggttgtattactaccaaggagctcgggactgtgatgaggt 162
Query: 325 cactggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccg 384
| || || || ||||| || |||||||| | |||||||||||||| ||||| ||||| |
Sbjct: 163 cgctaggccagaacccaactgaggctgaattgcaggacatgatcaacgaggttgatgctg 222
Query: 385 atggcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaagg 444
|||| ||||| ||||| ||||| || || || || ||||| ||||| |||||||||||||
Sbjct: 223 atggaaacggtaccattgatttccctgaattccttaacctgatggcccgcaagatgaagg 282
Query: 445 acaccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacg 504
| || || || ||||||||||||||||| || || ||||||||||||||||| || || |
Sbjct: 283 atactgattccgaggaagagctcaaggaagctttccgtgtgtttgacaaggatcaaaatg 342
Query: 505 gcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaactg 564
| |||||||| || || |||||||| ||||||||||||||||| || |||||||| ||||
Sbjct: 343 gtttcatctctgcagctgagctccgtcatgtcatgacaaatctcggagagaagctgactg 402
Query: 565 atgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaact 624
|||| || || ||||||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 403 atgaagaagttgacgagatgattcgcgaggctgatgttgatggtgatgggcagatcaact 462
Query: 625 acgaggagtttgttaaggtcatgatggccaagtga 659
| ||||||||||| || ||||||||||| ||||||
Sbjct: 463 atgaggagtttgtcaaagtcatgatggctaagtga 497
>gb|CO512626.1|CO512626 s13dSG13E0500035_121178 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 315 bits (159), Expect = 3e-086
Identities = 372/443 (83%)
Strand = Plus / Plus
Query: 210 atggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttc 269
||||| || |||||||| || || |||||| | ||||||||||| || |||||| | |||
Sbjct: 98 atggcagatcaactcacagatgatcagatctctgagttcaaggaagctttcagcttattc 157
Query: 270 gacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactg 329
|| ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||| ||
Sbjct: 158 gataaggatggcgatggttgcatcacaaccaaggagcttggaactgttatgcgttcattg 217
Query: 330 gggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggc 389
||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 218 gggcaaaacccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatggg 277
Query: 390 aacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaaggacacc 449
|| || || || || || || |||||||| ||||| ||||| | |||||||||||||||
Sbjct: 278 aatggtactattgacttccctgagtttcttaacctcatggcaaggaagatgaaggacacc 337
Query: 450 gactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttc 509
||||| ||||| ||||| || ||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 338 gactccgaggaggagctgaaagaggcgtttcgggtttttgacaaggatcagaatggtttc 397
Query: 510 atctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaactgatgag 569
|| || || || ||||| || ||||| ||||| || ||||| |||||||| || |||||
Sbjct: 398 atttctgctgctgagcttcgtcatgtgatgaccaaccttggcgagaagctcaccgatgaa 457
Query: 570 gaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaactacgag 629
|| || || ||||||||||||||||||||||| ||||||||||| || || ||||| |||
Sbjct: 458 gaagtcgatgagatgatccgtgaggctgatgttgatggtgatggtcaaataaactatgag 517
Query: 630 gagtttgttaaggtcatgatggc 652
|| || |||||||||||||||||
Sbjct: 518 gaattcgttaaggtcatgatggc 540
>gb|CO515666.1|CO515666 s13dSG60D0300030_419481 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 513
Score = 303 bits (153), Expect = 1e-082
Identities = 363/433 (83%)
Strand = Plus / Plus
Query: 205 ctcccatggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcc 264
|||| ||||| || |||||||||||||| |||||| | ||||| ||||| || |||||||
Sbjct: 81 ctccaatggccgatcaactcaccgacgagcagatctctgagtttaaggaagctttcagcc 140
Query: 265 tcttcgacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgtt 324
| ||||| ||||| || |||||||| || || ||||||||||| || ||||| ||| | |
Sbjct: 141 tattcgataaggatggcgatggttgtattactaccaaggagctcgggactgtgatgaggt 200
Query: 325 cactggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccg 384
| || || || ||||| || |||||||| | |||||||||||||| ||||| ||||| |
Sbjct: 201 cgctaggccagaacccaactgaggctgaattgcaggacatgatcaacgaggttgatgctg 260
Query: 385 atggcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaagg 444
|||| ||||| ||||| ||||| || || || || ||||| ||||| |||||||||||||
Sbjct: 261 atggaaacggtaccattgatttccctgaattccttaacctgatggcccgcaagatgaagg 320
Query: 445 acaccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacg 504
| || || || ||||||||||||||||| || || ||||||||||||||||| || || |
Sbjct: 321 atactgattccgaggaagagctcaaggaagctttccgtgtgtttgacaaggatcaaaatg 380
Query: 505 gcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaactg 564
| |||||||| || || |||||||| ||||||||||||||||| || |||||||| ||||
Sbjct: 381 gtttcatctctgcagctgagctccgtcatgtcatgacaaatctcggagagaagctgactg 440
Query: 565 atgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaact 624
|||| || || ||||||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 441 atgaagaagttgacgagatgattcgcgaggctgatgttgatggtgatgggcagatcaact 500
Query: 625 acgaggagtttgt 637
| |||||||||||
Sbjct: 501 atgaggagtttgt 513
>gb|CO516761.1|CO516761 s13dSG94B0100009_446850 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 443
Score = 234 bits (118), Expect = 1e-061
Identities = 292/350 (83%)
Strand = Plus / Plus
Query: 210 atggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttc 269
||||| || |||||||| || || |||||| | ||||||||||| || |||||| | |||
Sbjct: 93 atggcagatcaactcacagatgatcagatctctgagttcaaggaagctttcagcttattc 152
Query: 270 gacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactg 329
|| ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||| ||
Sbjct: 153 gataaggatggcgatggttgcatcacaaccaaggagcttggaactgttatgcgttcattg 212
Query: 330 gggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggc 389
||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 213 gggcaaaacccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatggg 272
Query: 390 aacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaaggacacc 449
|| || || || || || || |||||||| ||||| ||||| | |||||||||||||||
Sbjct: 273 aatggtactattgacttccctgagtttcttaacctcatggcaaggaagatgaaggacacc 332
Query: 450 gactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttc 509
||||| ||||| ||||| || ||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 333 gactccgaggaggagctgaaagaggcgtttcgggtttttgacaaggatcagaatggtttc 392
Query: 510 atctccgccgccgagctccgccatgtcatgacaaatcttggggagaagct 559
|| || || || ||||| || ||||| ||||| || ||||| ||||||||
Sbjct: 393 atttctgctgctgagcttcgtcatgtgatgaccaaccttggtgagaagct 442
>gb|CO514921.1|CO514921 s13dSG63A1100085_397347 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 406
Score = 216 bits (109), Expect = 2e-056
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 219 caactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttcgacaaggac 278
|||||||| || || |||||| | ||||||||||| || |||||| | ||||| |||||
Sbjct: 101 caactcacagatgatcagatctctgagttcaaggaagctttcagcttattcgataaggat 160
Query: 279 ggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactggggcaaaac 338
|| |||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 161 ggcgatggttgcatcacaaccaaggagcttggaactgttatgcgttcattggggcaaaac 220
Query: 339 cctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggcacc 398
|| || ||||| ||||| ||||||||||||||||| || ||||| ||||| || || ||
Sbjct: 221 ccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatgggaatggtact 280
Query: 399 atcgattttccagagtttctgaaccttatggctcgcaagatgaaggacaccgactctgag 458
|| || || || |||||||| ||||| ||||| | |||||||||||||||||||| |||
Sbjct: 281 attgacttccctgagtttcttaacctcatggcaaggaagatgaaggacaccgactccgag 340
Query: 459 gaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttcat 511
|| ||||| || ||||| ||||| || ||||||||||| ||||| || |||||
Sbjct: 341 gaggagctgaaagaggcgtttcgggtttttgacaaggatcagaatggtttcat 393
>gb|CO512627.1|CO512627 s13dSG13E0600039_121180 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 355
Score = 192 bits (97), Expect = 3e-049
Identities = 217/257 (84%)
Strand = Plus / Plus
Query: 210 atggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttc 269
||||| || |||||||| || || |||||| | ||||||||||| || |||||| | |||
Sbjct: 98 atggcagatcaactcacagatgatcagatctctgagttcaaggaagctttcagcttattc 157
Query: 270 gacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactg 329
|| ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||| ||
Sbjct: 158 gataaggatggcgatggttgcatcacaaccaaggagcttggaactgttatgcgttcattg 217
Query: 330 gggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggc 389
||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 218 gggcaaaacccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatggg 277
Query: 390 aacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaaggacacc 449
|| || || || || || || |||||||| ||||| ||||| | |||||||||||||||
Sbjct: 278 aatggtactattgacttccctgagtttcttaacctcatggcaaggaagatgaaggacacc 337
Query: 450 gactctgaggaagagct 466
||||| ||||| |||||
Sbjct: 338 gactccgaggaggagct 354
>gb|CO515133.1|CO515133 s13dSG40G0300024_399131 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 336
Score = 184 bits (93), Expect = 8e-047
Identities = 207/245 (84%)
Strand = Plus / Plus
Query: 210 atggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttc 269
||||| || |||||||| || || |||||| | ||||||||||| || |||||| | |||
Sbjct: 89 atggcagatcaactcacagatgatcagatctctgagttcaaggaagctttcagcttattc 148
Query: 270 gacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactg 329
|| ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||| ||
Sbjct: 149 gataaggatggcgatggttgcatcacaaccaaggagcttggaactgttatgcgttcattg 208
Query: 330 gggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggc 389
||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 209 gggcaaaacccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatggg 268
Query: 390 aacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaaggacacc 449
|| || || || || || || |||||||| ||||| ||||| | |||||||||||||||
Sbjct: 269 aatggtactattgacttccctgagtttcttaacctcatggcaaggaagatgaaggacacc 328
Query: 450 gactc 454
|||||
Sbjct: 329 gactc 333
>gb|CO515130.1|CO515130 s13dSG40F1000091_399125 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 331
Score = 168 bits (85), Expect = 5e-042
Identities = 187/221 (84%)
Strand = Plus / Plus
Query: 210 atggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttc 269
||||| || |||||||| ||||| |||||| | ||||||||||| || |||||| | |||
Sbjct: 111 atggcagatcaactcactgacgatcagatctctgagttcaaggaagctttcagcttattc 170
Query: 270 gacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactg 329
|| ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||| ||
Sbjct: 171 gataaggatggcgatggttgcatcacaaccaaggagcttggaactgttatgcgttcattg 230
Query: 330 gggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggc 389
||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 231 gggcaaaacccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatggg 290
Query: 390 aacggcaccatcgattttccagagtttctgaaccttatggc 430
|| || || || || || || |||||||| ||||| |||||
Sbjct: 291 aatggtactattgacttccctgagtttcttaacctcatggc 331
>gb|CO515091.1|CO515091 s13dSG40A0900069_399047 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 333
Score = 153 bits (77), Expect = 3e-037
Identities = 185/221 (83%)
Strand = Plus / Plus
Query: 210 atggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctcttc 269
||||| || |||||||| || || |||||| | ||||||||||| || |||||| | |||
Sbjct: 99 atggcagatcaactcacagatgatcagatctctgagttcaaggaagctttcagcttattc 158
Query: 270 gacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactg 329
|| ||||| || |||||||||||||| ||| ||||||| |||||||| ||||||||| ||
Sbjct: 159 gataaggatggcgatggttgcatcacaaccgaggagcttggaactgttatgcgttcattg 218
Query: 330 gggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggc 389
||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 219 gggcaaaacccaactgaggcagagcttcaggacatgatcaatgaagtagatgctgatggg 278
Query: 390 aacggcaccatcgattttccagagtttctgaaccttatggc 430
|| || || || || || || |||||||| ||||| |||||
Sbjct: 279 aatggtactattgacttccctgagtttcttaacctcatggc 319
>gb|CO514272.1|CO514272 s13dSG76E0600039_157206 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 445
Score = 101 bits (51), Expect = 9e-022
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 546 cttggggagaagctaactgatgaggaggtagacgagatgatccgtgaggctgatgtcgat 605
||||| |||||||| || ||||| || || || ||||||||||||||||||||||| |||
Sbjct: 46 cttggcgagaagctcaccgatgaagaagtcgatgagatgatccgtgaggctgatgttgat 105
Query: 606 ggtgatggccagattaactacgaggagtttgttaaggtcatgatggc 652
|||||||| || || ||||| ||||| || |||||||||||||||||
Sbjct: 106 ggtgatggtcaaataaactatgaggaattcgttaaggtcatgatggc 152
>gb|CO513513.1|CO513513 s13dSG12C0700050_139808 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 76
Score = 69.9 bits (35), Expect = 3e-012
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 606 ggtgatggccagattaactacgaggagtttgttaaggtcatgatggccaagtgag 660
|||||||||||||| ||||| ||||||||||| || || ||||||||||||||||
Sbjct: 3 ggtgatggccagatcaactatgaggagtttgtcaaagttatgatggccaagtgag 57
>gb|CO514579.1|CO514579 s13dSG42D0900078_327818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 555
Score = 34.2 bits (17), Expect = 0.18
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 638 taaggtcatgatggccaagtg 658
|||||||| ||||||||||||
Sbjct: 506 taaggtcaagatggccaagtg 486
>gb|CO516520.1|CO516520 s13dSG57A0900067_446368 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 401
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 636 gttaaggtcatgatggc 652
|||||||||||||||||
Sbjct: 8 gttaaggtcatgatggc 24
>gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase activation domain binding protein
mRNA, complete cds
Length = 1321
Score = 34.2 bits (17), Expect = 0.18
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 5 gaattcgcggccgngtcgac 24
||||||||||||| ||||||
Sbjct: 1321 gaattcgcggccgcgtcgac 1302
Score = 34.2 bits (17), Expect = 0.18
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 5 gaattcgcggccgngtcgac 24
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Sbjct: 1 gaattcgcggccgcgtcgac 20
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1872
Number of Sequences: 7669
Number of extensions: 1872
Number of successful extensions: 428
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 17
length of query: 986
length of database: 3,745,706
effective HSP length: 16
effective length of query: 970
effective length of database: 3,623,002
effective search space: 3514311940
effective search space used: 3514311940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)