BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441114.2.1
         (964 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO512234.1|CO512234  s13dSG03E1200087_113982 Glandular tr...    40   0.003
>gb|CO512234.1|CO512234 s13dSG03E1200087_113982 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 588

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 68/84 (80%)
 Strand = Plus / Plus

                                                                       
Query: 439 ggcaagcctgccggcatgttcttcagcactggaacccagggtggtggccaagagactaca 498
           |||||||||||||| || |||| |||||| ||  | || || || || ||||||||||||
Sbjct: 385 ggcaagcctgccggaatcttctacagcaccggttctcaaggcggcggacaagagactaca 444

                                   
Query: 499 ccgctgacggcgattacccagctg 522
            |||| || || ||||| ||||||
Sbjct: 445 gcgcttactgctattactcagctg 468

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                       
Query: 142 gtgtactattccatgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgcc 201
           |||||||| ||||||||||| ||||| |  |||||||| || || || ||||| ||||| 
Sbjct: 88  gtgtactactccatgtatggacatgtggagaaactagcagaagaaataaagaagggtgct 147

                                                       
Query: 202 ttatctgttgaaggtgttgaggctaagatatggcaggtccctga 245
              ||||| || || |||||||| ||  |||||||||| |||||
Sbjct: 148 gcttctgtggagggcgttgaggccaaactatggcaggtacctga 191
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1254
Number of Sequences: 7669
Number of extensions: 1254
Number of successful extensions: 300
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 3
length of query: 964
length of database: 3,745,706
effective HSP length: 16
effective length of query: 948
effective length of database: 3,623,002
effective search space: 3434605896
effective search space used: 3434605896
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)