BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516510.1|CO516510 s13dSG28H0600058_446348 Glandular tr... 36 0.023
gb|CO514315.1|CO514315 s13dSG84A0600037_157292 Glandular tr... 34 0.092
>gb|CO516510.1|CO516510 s13dSG28H0600058_446348 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 410
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 204 aactcatcagtcactaag 221
||||||||||||||||||
Sbjct: 10 aactcatcagtcactaag 27
>gb|CO514315.1|CO514315 s13dSG84A0600037_157292 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 203
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 222 tgaaaaacaaccttgtc 238
|||||||||||||||||
Sbjct: 187 tgaaaaacaaccttgtc 203
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 939
Number of Sequences: 7669
Number of extensions: 939
Number of successful extensions: 273
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 2
length of query: 515
length of database: 3,745,706
effective HSP length: 16
effective length of query: 499
effective length of database: 3,623,002
effective search space: 1807877998
effective search space used: 1807877998
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)