BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513216.1|CO513216 s13dSG24C0900066_129596 Glandular tr... 38 0.016
gb|CO514554.1|CO514554 s13dSG42B0500045_327768 Glandular tr... 36 0.064
>gb|CO513216.1|CO513216 s13dSG24C0900066_129596 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.016
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 933 aatggtatgaacctgagtggtggaaatttgg 963
||||||||||||| || |||||||| |||||
Sbjct: 52 aatggtatgaaccagaatggtggaagtttgg 82
>gb|CO514554.1|CO514554 s13dSG42B0500045_327768 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 597
Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 412 ggagatggacctgaccaa 429
||||||||||||||||||
Sbjct: 210 ggagatggacctgaccaa 227
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3329
Number of Sequences: 7669
Number of extensions: 3329
Number of successful extensions: 651
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 3
length of query: 1380
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1364
effective length of database: 3,623,002
effective search space: 4941774728
effective search space used: 4941774728
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)