BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF332134.1| Medicago sativa FtsH protease (FtsH) mRNA, c... 34 0.11
gb|AF439380.1| Medicago sativa retrotransposon polyprotein ... 32 0.44
gb|AY196987.1| Medicago sativa retrotransposon MIRE1, compl... 32 0.44
emb|AJ635582.1| Medicago sativa subsp. falcata mob1 gene fo... 32 0.44
emb|AJ635583.1| Medicago sativa subsp. falcata mob1 gene fo... 32 0.44
>gb|AF332134.1| Medicago sativa FtsH protease (FtsH) mRNA, complete cds; chloroplast
gene for chloroplast product
Length = 2352
Score = 34.2 bits (17), Expect = 0.11
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 505 gaaggcgaagtcgaaggcgcc 525
|||||||||||| ||||||||
Sbjct: 1069 gaaggcgaagtcaaaggcgcc 1089
>gb|AF439380.1| Medicago sativa retrotransposon polyprotein gene interrupted by LTR
retroelement MCIRE, complete sequence
Length = 18789
Score = 32.2 bits (16), Expect = 0.44
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 131 aaccatgcattattaattga 150
|||||| |||||||||||||
Sbjct: 14094 aaccatacattattaattga 14075
>gb|AY196987.1| Medicago sativa retrotransposon MIRE1, complete sequence
Length = 13561
Score = 32.2 bits (16), Expect = 0.44
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 131 aaccatgcattattaattga 150
|||||| |||||||||||||
Sbjct: 4680 aaccatacattattaattga 4661
>emb|AJ635582.1| Medicago sativa subsp. falcata mob1 gene for Mob1-like protein, exons
1-3, allele wild-type
Length = 1627
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 89 acaatgcaagcacaaa 104
||||||||||||||||
Sbjct: 1545 acaatgcaagcacaaa 1530
>emb|AJ635583.1| Medicago sativa subsp. falcata mob1 gene for Mob1-like protein, exons
1-3, allele mutant
Length = 1693
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 89 acaatgcaagcacaaa 104
||||||||||||||||
Sbjct: 1611 acaatgcaagcacaaa 1596
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 795
Number of Sequences: 7669
Number of extensions: 795
Number of successful extensions: 229
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 7
length of query: 617
length of database: 3,745,706
effective HSP length: 16
effective length of query: 601
effective length of database: 3,623,002
effective search space: 2177424202
effective search space used: 2177424202
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)