BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418879.2.3
(1694 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514747.1|CO514747 s13dSG55F1100095_328154 Glandular tr... 127 3e-029
gb|CO514605.1|CO514605 s13dSG42G0700056_327870 Glandular tr... 94 4e-019
gb|CO516632.1|CO516632 s13dSG66E0200007_446592 Glandular tr... 94 4e-019
gb|AY560003.1| Medicago sativa S-adenosylmethionine synthas... 86 9e-017
gb|AW698879.1|AW698879 r109 non-glandular-haired subtracted... 58 2e-008
gb|CO514483.1|CO514483 s13dSG43C0600040_327626 Glandular tr... 40 0.005
gb|CO512603.1|CO512603 s13dSG13B0900073_121132 Glandular tr... 38 0.020
gb|CO515432.1|CO515432 s13dSG50E0800067_417923 Glandular tr... 36 0.078
>gb|CO514747.1|CO514747 s13dSG55F1100095_328154 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 435
Score = 127 bits (64), Expect = 3e-029
Identities = 148/176 (84%)
Strand = Plus / Minus
Query: 1404 acgatcttctcgtagtccacggtcgccttggtcgtgatctcgccgaacaccatcaccatg 1463
||||||||||| ||||| ||| | |||||||| || || || || || ||||| ||||||
Sbjct: 329 acgatcttctcatagtctacgttggccttggttgttatttctccaaagaccatgaccatg 270
Query: 1464 ttggtcttggtgcaggtctcgcaggccaccttgctgtcggggtcctgcgcgaggcatgcg 1523
|| ||||||||||| ||||| ||||| |||||||||| ||||||||| | || || |||
Sbjct: 269 ttagtcttggtgcatgtctcacaggcacccttgctgtcagggtcctgctcaagacaagcg 210
Query: 1524 tcaagcacggcgtccgacacctggtcgcacagcttgtcggggtgcccctcgttcac 1579
|| ||||| || || || | |||||||||||||||||||||||| |||||||||||
Sbjct: 209 tcgagcactgcatcagagatctggtcgcacagcttgtcggggtgaccctcgttcac 154
>gb|CO514605.1|CO514605 s13dSG42G0700056_327870 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 600
Score = 93.7 bits (47), Expect = 4e-019
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 1437 gtgatctcgccgaacaccatcaccatgttggtcttggtgcaggtctcgcaggccaccttg 1496
|||||||| || || ||||| |||||||||||||| ||||| || || || || || |||
Sbjct: 291 gtgatctcaccaaagaccataaccatgttggtctttgtgcaagtttcacatgcaactttg 232
Query: 1497 ctgtcggggtcctgcgcgaggcatgcgtcaagcacggcgtccgacacctggtcgcacagc 1556
||||| || || ||| ||||||| || ||||| ||||| || || | ||||||||| |||
Sbjct: 231 ctgtctggatcttgctcgaggcaagcatcaagaacggcatcagagatctggtcgcaaagc 172
Query: 1557 ttgtcggggtgcccctcgttcac 1579
||||||||||| |||||||||||
Sbjct: 171 ttgtcggggtgtccctcgttcac 149
>gb|CO516632.1|CO516632 s13dSG66E0200007_446592 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 425
Score = 93.7 bits (47), Expect = 4e-019
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 1437 gtgatctcgccgaacaccatcaccatgttggtcttggtgcaggtctcgcaggccaccttg 1496
|||||||| || || ||||| |||||||||||||| ||||| || || || || || |||
Sbjct: 291 gtgatctcaccaaagaccataaccatgttggtctttgtgcaagtttcacatgcaactttg 232
Query: 1497 ctgtcggggtcctgcgcgaggcatgcgtcaagcacggcgtccgacacctggtcgcacagc 1556
||||| || || ||| ||||||| || ||||| ||||| || || | ||||||||| |||
Sbjct: 231 ctgtctggatcttgctcgaggcaagcatcaagaacggcatcagagatctggtcgcaaagc 172
Query: 1557 ttgtcggggtgcccctcgttcac 1579
||||||||||| |||||||||||
Sbjct: 171 ttgtcggggtgtccctcgttcac 149
>gb|AY560003.1| Medicago sativa S-adenosylmethionine synthase mRNA, complete cds
Length = 1173
Score = 85.7 bits (43), Expect = 9e-017
Identities = 163/203 (80%)
Strand = Plus / Minus
Query: 1392 caggtatcgcgcacgatcttctcgtagtccacggtcgccttggtcgtgatctcgccgaac 1451
|||||||| ||||| || ||||| ||||| || | |||||||| |||||||| || ||
Sbjct: 218 caggtatcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaag 159
Query: 1452 accatcaccatgttggtcttggtgcaggtctcgcaggccaccttgctgtcggggtcctgc 1511
||||| |||||||||||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 158 accataaccatgttggtcttagtgcaagtctcacatgcaaccttgctgtctacgtcctgt 99
Query: 1512 gcgaggcatgcgtcaagcacggcgtccgacacctggtcgcacagcttgtcggggtgcccc 1571
| ||||| || || ||||| || || || | || || || ||||||||||| || |||
Sbjct: 98 tcaaggcaagcatctagcacagcatcagagatttgatcacaaagcttgtcgggatgaccc 39
Query: 1572 tcgttcacggactccgaggtgaa 1594
|| ||||||||||| ||||||||
Sbjct: 38 tcattcacggactcagaggtgaa 16
Score = 52.0 bits (26), Expect = 1e-006
Identities = 179/230 (77%)
Strand = Plus / Minus
Query: 837 gtgtcgatgatgatcttgcggccggtgaggccggcgtcaccgtggggcccgccgatgacg 896
||||| ||||||||||| | || ||||| || || |||||||| || || || ||||||
Sbjct: 773 gtgtcaatgatgatcttcctaccagtgagaccagcatcaccgtgaggacctccaatgacg 714
Query: 897 aagcgcccggacgggttgaggtggaagatggtcttctcgtcgaggtacttctcagggatc 956
|| || || || ||||| | ||| || |||||||| || |||||||||||||| |||
Sbjct: 713 aaacggccagaagggttcaagtgaaaaatggtcttggaatcaaggtacttctcaggaatc 654
Query: 957 acgggcttgatgacgtgctccttgaggtcggcggcgatctcgtcgttggtgacggtctcg 1016
|| ||||| || || ||||| ||||| || || || || || || ||||| || |||||
Sbjct: 653 acaggctttataacatgctctttgagatcagcagcaatttcatcattggtaacagtctca 594
Query: 1017 tcgtgctgggtggagatgagcacggtgtgcacgcggacgggcaccatggc 1066
|| || || || ||||||||||| ||||| || || || || ||||||||
Sbjct: 593 tcatgttgagtagagatgagcacagtgtggacacgaacagggaccatggc 544
Score = 40.1 bits (20), Expect = 0.005
Identities = 136/174 (78%), Gaps = 3/174 (1%)
Strand = Plus / Minus
Query: 459 ggcttcaccacctcccaggtgaagtcggcgtcgtcacggccgaaatggccgtaagcggcg 518
||||||||||| ||||| |||||||| || || || | || ||||| || ||||| ||
Sbjct: 1154 ggcttcaccacttcccatgtgaagtcagcatcttccctaccaaaatgtccataagcagca 1095
Query: 519 gtcttgatgaacctg---ttgccgcccttcttcaggtcgaggttgatgctgatcatcccg 575
||||| | ||||||| ||||| ||| || || || |||||||| |||||| ||
Sbjct: 1094 gtcttcaagaacctgccattgccacccctcaagagatcaaggttgatagagatcatgcca 1035
Query: 576 ggcctgaagtcgaagttctccttcacgatcttgaggatctccttgtcggggatc 629
|||||||| || ||||||| |||||| || |||||||| ||||| || ||||||
Sbjct: 1034 ggcctgaaatcaaagttctgcttcacaatattgaggatttccttatcagggatc 981
>gb|AW698879.1|AW698879 r109 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 205
Score = 58.0 bits (29), Expect = 2e-008
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 795 ccggagaaggcgccaccgccgtgggctccccagccgccgtacgtgtcgatgatgatcttg 854
|||||||| || ||||| ||||| || ||||| || ||||| || |||||||||||||||
Sbjct: 70 ccggagaaagcaccaccaccgtgtgcaccccaaccaccgtaggtatcgatgatgatcttg 11
Query: 855 cggcc 859
|||||
Sbjct: 10 cggcc 6
>gb|CO514483.1|CO514483 s13dSG43C0600040_327626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.005
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 552 tcgaggttgatgctgatcatcccgggcctgaagtcgaagttctccttcacgatcttgagg 611
||||||||||| |||||| || ||||||||||| ||| || ||||| || || |||
Sbjct: 265 tcgaggttgatagagatcattccaggcctgaagtcaaaggattctttcacaatgttaagg 206
Query: 612 atctccttgtcggggatcgtgccggtgccgta 643
|| |||||||| |||||| | ||||| |||||
Sbjct: 205 atttccttgtcagggatctttccggtaccgta 174
>gb|CO512603.1|CO512603 s13dSG13B0900073_121132 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 250 gcatgggttgcagttgcag 268
|||||||||||||||||||
Sbjct: 318 gcatgggttgcagttgcag 300
>gb|CO515432.1|CO515432 s13dSG50E0800067_417923 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 601
Score = 36.2 bits (18), Expect = 0.078
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 206 ggctgctgccaagccaaa 223
||||||||||||||||||
Sbjct: 281 ggctgctgccaagccaaa 298
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2301
Number of Sequences: 7669
Number of extensions: 2301
Number of successful extensions: 561
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 16
length of query: 1694
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1678
effective length of database: 3,623,002
effective search space: 6079397356
effective search space used: 6079397356
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)