BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.3
(2175 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516976.1|CO516976 s13dSG81D0100010_468498 Glandular tr... 60 7e-009
emb|AJ311049.1|MSA311049 Medicago sativa pr10.1 gene for cl... 34 0.40
>gb|CO516976.1|CO516976 s13dSG81D0100010_468498 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 299
Score = 60.0 bits (30), Expect = 7e-009
Identities = 174/222 (78%)
Strand = Plus / Plus
Query: 92 aaaatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggccgtc 151
|||||||||||||| || ||||| || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 78 aaaatggtgaagatttgttgcattggagctggttatgttggtggtccaacaatggctgtg 137
Query: 152 attgccctcaagtgcccagacattgaggtcgtcgtcgttgacatctccaagccccgcatt 211
||||| | ||||| || || |||||||| | || || || ||| | | ||| || ||
Sbjct: 138 attgctttgaagtgtcctgagattgaggtagctgttgtggatatcgctacgcctcgaatc 197
Query: 212 gaggcctggaacagtgacaccctgccaatctacgagcctggtctcgatgatgttgtgaag 271
| || |||||||||||| | |||| || || || |||||||| |||||||| ||||||
Sbjct: 198 aatgcttggaacagtgaccacttgcctatatatgaacctggtcttgatgatgtggtgaag 257
Query: 272 cagtgcaggggcaggaacctcttcttcagcactgatgttgag 313
|||||| || | ||| || |||||||||||||| ||||||
Sbjct: 258 aagtgcacaggaaagaatcttttcttcagcactgacgttgag 299
>emb|AJ311049.1|MSA311049 Medicago sativa pr10.1 gene for class 10 PR protein
Length = 3446
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2056 ggcttaagagtttttct 2072
|||||||||||||||||
Sbjct: 1378 ggcttaagagtttttct 1394
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3432
Number of Sequences: 7669
Number of extensions: 3432
Number of successful extensions: 825
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 3
length of query: 2175
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2158
effective length of database: 3,615,333
effective search space: 7801888614
effective search space used: 7801888614
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)