BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2404801.2.1
         (867 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO512078.1|CO512078  s13dSG18F0200015_108476 Glandular tr...    36   0.040
gb|CO513629.1|CO513629  s13dSG16H0100012_140040 Glandular tr...    36   0.040
gb|CO515170.1|CO515170  s13dSG62C0200018_399205 Glandular tr...    36   0.040
gb|CO516858.1|CO516858  s13dSG98F0500044_447044 Glandular tr...    36   0.040
gb|CO516954.1|CO516954  s13dSG81A0100001_468454 Glandular tr...    36   0.040

>gb|CO512078.1|CO512078 s13dSG18F0200015_108476 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 588

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 97  gcaaattcttgatgagaa 114
           ||||||||||||||||||
Sbjct: 422 gcaaattcttgatgagaa 439



>gb|CO513629.1|CO513629 s13dSG16H0100012_140040 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 583

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 97  gcaaattcttgatgagaa 114
           ||||||||||||||||||
Sbjct: 423 gcaaattcttgatgagaa 440



>gb|CO515170.1|CO515170 s13dSG62C0200018_399205 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 494

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 97  gcaaattcttgatgagaa 114
           ||||||||||||||||||
Sbjct: 423 gcaaattcttgatgagaa 440



>gb|CO516858.1|CO516858 s13dSG98F0500044_447044 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 546

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 97  gcaaattcttgatgagaa 114
           ||||||||||||||||||
Sbjct: 423 gcaaattcttgatgagaa 440



>gb|CO516954.1|CO516954 s13dSG81A0100001_468454 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 480

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 97  gcaaattcttgatgagaa 114
           ||||||||||||||||||
Sbjct: 423 gcaaattcttgatgagaa 440



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1471
Number of Sequences: 7669
Number of extensions: 1471
Number of successful extensions: 361
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 5
length of query: 867
length of database: 3,745,706
effective HSP length: 16
effective length of query: 851
effective length of database: 3,623,002
effective search space: 3083174702
effective search space used: 3083174702
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)