BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Ka... 52 5e-007
gb|CO511756.1|CO511756 s13dSG01G0100008_103412 Glandular tr... 34 0.12
gb|CO514341.1|CO514341 s13dSG84D0400030_157344 Glandular tr... 34 0.12
gb|CO514072.1|CO514072 s13dSG75A0300017_156806 Glandular tr... 32 0.47
>gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U380, mRNA sequence
Length = 672
Score = 52.0 bits (26), Expect = 5e-007
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 302 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 351
>gb|CO511756.1|CO511756 s13dSG01G0100008_103412 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 535
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 ttctccccacctttggt 55
|||||||||||||||||
Sbjct: 104 ttctccccacctttggt 120
>gb|CO514341.1|CO514341 s13dSG84D0400030_157344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 ctctcaaatatctctca 21
|||||||||||||||||
Sbjct: 22 ctctcaaatatctctca 38
>gb|CO514072.1|CO514072 s13dSG75A0300017_156806 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 32.2 bits (16), Expect = 0.47
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 532 ttattactagtataatgcta 551
|||||| |||||||||||||
Sbjct: 39 ttattaatagtataatgcta 20
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1021
Number of Sequences: 7669
Number of extensions: 1021
Number of successful extensions: 185
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 4
length of query: 654
length of database: 3,745,706
effective HSP length: 16
effective length of query: 638
effective length of database: 3,623,002
effective search space: 2311475276
effective search space used: 2311475276
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)