BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.28
(3878 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 58 5e-008
gb|CO512611.1|CO512611 s13dSG13C0900066_121148 Glandular tr... 40 0.012
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 58.0 bits (29), Expect = 5e-008
Identities = 113/141 (80%)
Strand = Plus / Minus
Query: 1027 gatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtagtccctggaacaca 1086
||||| ||||||||| | ||||| |||||||||| |||||||| | || ||||| |
Sbjct: 413 gatgtaacagtgaagtttgtgtcgacaccagctaaaaccttgagcaaaccttggaaaagg 354
Query: 1087 gcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtca 1146
||||| | |||||| || | |||||||| ||||||||||| || || |||||||| |||
Sbjct: 353 gcaaaaaaatgtgatgaagcacctccaatcacccaaaactgttcattcctccaccaatca 294
Query: 1147 tcgatgcctacaccactccat 1167
|| || || ||||||| ||||
Sbjct: 293 tctattccaacaccaccccat 273
>gb|CO512611.1|CO512611 s13dSG13C0900066_121148 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.012
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3242 gcttctgcttccagctctcc 3261
||||||||||||||||||||
Sbjct: 351 gcttctgcttccagctctcc 332
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,023
Number of Sequences: 7669
Number of extensions: 10023
Number of successful extensions: 3012
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3007
Number of HSP's gapped (non-prelim): 5
length of query: 3878
length of database: 3,745,706
effective HSP length: 17
effective length of query: 3861
effective length of database: 3,615,333
effective search space: 13958800713
effective search space used: 13958800713
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)