BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805320.2.1
(955 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF135596.1|AF135596 Medicago sativa Skp1 (SKP1) mRNA, pa... 139 4e-033
gb|CO517166.1|CO517166 s13dSG33D0700062_474416 Glandular tr... 121 1e-027
gb|CO513371.1|CO513371 s13dSG38C0400022_129906 Glandular tr... 115 6e-026
gb|CO517294.1|CO517294 s13dSG45C1000082_486184 Glandular tr... 101 9e-022
gb|CO513276.1|CO513276 s13dSG37B0100009_129716 Glandular tr... 78 1e-014
gb|CO515179.1|CO515179 s13dSG62C1100086_399223 Glandular tr... 46 5e-005
gb|CO517136.1|CO517136 s13dSG29H0800076_468818 Glandular tr... 36 0.044
>gb|AF135596.1|AF135596 Medicago sativa Skp1 (SKP1) mRNA, partial cds
Length = 592
Score = 139 bits (70), Expect = 4e-033
Identities = 154/182 (84%)
Strand = Plus / Minus
Query: 371 tcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttct 430
||||| || |||||||| | ||| |||||||| |||||||| |||||||| ||||| |||
Sbjct: 428 tcctcctcttcctcaggtgagaaatcattcttaatgttgaatgtcttgcggatctcctct 369
Query: 431 ggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttg 490
|||||||| |||||||||||||| ||||||||||| ||||| || || |||| | ||||
Sbjct: 368 ggtgtctttcccttgatcatgtctgcaacagtctggcaggtaagatccagcaagctcttg 309
Query: 491 atgttcagatagtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacg 550
|| |||| || || |||||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 308 atattcaagtaattagcagccaagatgagatcaaaaagcgtagcctgatcaaccttgacg 249
Query: 551 aa 552
||
Sbjct: 248 aa 247
Score = 38.2 bits (19), Expect = 0.011
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 716 acgttaggaagagggatgccgttgtcggcgcagtcatcctcgatcat 762
||||| ||||||||||| || |||| ||||| ||||| ||||||||
Sbjct: 137 acgttgggaagagggattccactgtcagcgcaatcatcttcgatcat 91
>gb|CO517166.1|CO517166 s13dSG33D0700062_474416 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 121 bits (61), Expect = 1e-027
Identities = 145/173 (83%)
Strand = Plus / Plus
Query: 380 tcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttg 439
|||||||||| ||| ||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 361 tcctcaggggagaaatcattcttgatgttgaatgtcttgcggatctcctctggggtcttt 420
Query: 440 cccttgatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcaga 499
|||||||||||| | ||||||||| | ||||| || || |||| | |||||| ||||
Sbjct: 421 cccttgatcatggctgcaacagtccggcaggtaagatccagcaagctcttgatattcaag 480
Query: 500 tagtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|| || |||||||||||||| || |||||||| ||||| || ||||| |||||
Sbjct: 481 taattagcagccaagatgagatcaaaaagcgtagcctgatcaaccttaacgaa 533
>gb|CO513371.1|CO513371 s13dSG38C0400022_129906 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 547
Score = 115 bits (58), Expect = 6e-026
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 395 tcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtca 454
||||||||||||||||| |||| || |||| ||||||||||| ||||||||||||||
Sbjct: 536 tcattcttgatgttgaatgtctgcggattctcctctggtgtctttcccttgatcatgtct 477
Query: 455 gcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaag 514
||||||||||| ||||| || || |||| | |||||| |||| || || |||||||||
Sbjct: 476 gcaacagtctggcaggtaagatccagcaagctcttgatattcaagtaattagcagccaag 417
Query: 515 atgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
||||| || |||||||| ||||| || |||||||||||
Sbjct: 416 atgagatcaaaaagcgtagcctgatcaaccttgacgaa 379
>gb|CO517294.1|CO517294 s13dSG45C1000082_486184 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 311
Score = 101 bits (51), Expect = 9e-022
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 395 tcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtca 454
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 238 tcattcttaatgttgaaggtcttgcgaatctcttcaggtgtcttccccttgatcatgtct 297
Query: 455 gcaacagtctg 465
|| ||||||||
Sbjct: 298 gccacagtctg 308
>gb|CO513276.1|CO513276 s13dSG37B0100009_129716 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 495
Score = 77.8 bits (39), Expect = 1e-014
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 442 cttgatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagata 501
|||||||||||| ||||||||||| ||||| || || |||| | |||||| |||| ||
Sbjct: 495 cttgatcatgtctgcaacagtctggcaggtaagatccagcaagctcttgatattcaagta 436
Query: 502 gtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|| |||||||||||||| || |||||||| ||||| || |||||||||||
Sbjct: 435 attagcagccaagatgagatcaaaaagcgtagcctgatcaaccttgacgaa 385
Score = 46.1 bits (23), Expect = 5e-005
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 716 acgttaggaagagggatgccgttgtcggcgcagtcatcctcgatcat 762
||||| ||||||||||| || |||||||||| ||||| ||||||||
Sbjct: 275 acgttgggaagagggattccactgtcggcgcaatcatcttcgatcat 229
>gb|CO515179.1|CO515179 s13dSG62C1100086_399223 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 503
Score = 46.1 bits (23), Expect = 5e-005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 735 cgttgtcggcgcagtcatcctcgatcatgtg 765
|||||||||| || |||||||||||||||||
Sbjct: 201 cgttgtcggcacaatcatcctcgatcatgtg 171
>gb|CO517136.1|CO517136 s13dSG29H0800076_468818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 36.2 bits (18), Expect = 0.044
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 62 atgaaaatattttaccat 79
||||||||||||||||||
Sbjct: 422 atgaaaatattttaccat 439
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1799
Number of Sequences: 7669
Number of extensions: 1799
Number of successful extensions: 561
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 17
length of query: 955
length of database: 3,745,706
effective HSP length: 16
effective length of query: 939
effective length of database: 3,623,002
effective search space: 3401998878
effective search space used: 3401998878
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)