BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514736.1|CO514736 s13dSG55E0700055_328132 Glandular tr... 36 0.051
emb|AJ245868.1|MSA245868 Medicago sativa mRNA for cysteine ... 36 0.051
gb|CO514364.1|CO514364 s13dSG84F0700059_157390 Glandular tr... 34 0.20
gb|CO516672.1|CO516672 s13dSG74A0400021_446672 Glandular tr... 34 0.20
gb|DR159680.1|DR159680 EST34 Medicago sativa cDNA-AFLP Medi... 34 0.20
>gb|CO514736.1|CO514736 s13dSG55E0700055_328132 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 351
Score = 36.2 bits (18), Expect = 0.051
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 929 tgcagcaatttggtcttc 946
||||||||||||||||||
Sbjct: 219 tgcagcaatttggtcttc 202
>emb|AJ245868.1|MSA245868 Medicago sativa mRNA for cysteine protease, partial (cyp15a gene)
Length = 890
Score = 36.2 bits (18), Expect = 0.051
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 929 tgcagcaatttggtcttc 946
||||||||||||||||||
Sbjct: 330 tgcagcaatttggtcttc 313
>gb|CO514364.1|CO514364 s13dSG84F0700059_157390 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 509
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 951 ttttcagaaaatggctc 967
|||||||||||||||||
Sbjct: 369 ttttcagaaaatggctc 385
>gb|CO516672.1|CO516672 s13dSG74A0400021_446672 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 446
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 951 ttttcagaaaatggctc 967
|||||||||||||||||
Sbjct: 305 ttttcagaaaatggctc 321
>gb|DR159680.1|DR159680 EST34 Medicago sativa cDNA-AFLP Medicago sativa cDNA clone S15 5',
mRNA sequence
Length = 352
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1041 acagcagcagcatgagc 1057
|||||||||||||||||
Sbjct: 259 acagcagcagcatgagc 243
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2654
Number of Sequences: 7669
Number of extensions: 2654
Number of successful extensions: 889
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 5
length of query: 1118
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1102
effective length of database: 3,623,002
effective search space: 3992548204
effective search space used: 3992548204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)