BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738978.2.1
(572 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513145.1|CO513145 s13dSG23D0600046_129454 Glandular tr... 32 0.41
gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular tr... 32 0.41
gb|CO515448.1|CO515448 s13dSG50H0800076_417955 Glandular tr... 32 0.41
>gb|CO513145.1|CO513145 s13dSG23D0600046_129454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 acgactatagaggaag 142
||||||||||||||||
Sbjct: 220 acgactatagaggaag 235
>gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 480
Score = 32.2 bits (16), Expect = 0.41
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 527 agcaccaccagcactaccag 546
|||| |||||||||||||||
Sbjct: 425 agcagcaccagcactaccag 406
>gb|CO515448.1|CO515448 s13dSG50H0800076_417955 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 575
Score = 32.2 bits (16), Expect = 0.41
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 527 agcaccaccagcactaccag 546
|||| |||||||||||||||
Sbjct: 108 agcagcaccagcactaccag 127
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 952
Number of Sequences: 7669
Number of extensions: 952
Number of successful extensions: 187
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 3
length of query: 572
length of database: 3,745,706
effective HSP length: 16
effective length of query: 556
effective length of database: 3,623,002
effective search space: 2014389112
effective search space used: 2014389112
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)