BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738931.2.11
(609 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513023.1|CO513023 s13dSG09G0100004_121972 Glandular tr... 107 9e-024
gb|CO514290.1|CO514290 s13dSG76G0100004_157242 Glandular tr... 107 9e-024
gb|CO514707.1|CO514707 s13dSG55B0800073_328074 Glandular tr... 100 2e-021
gb|AF172172.1|AF172172 Medicago sativa non-symbiotic hemogl... 34 0.11
gb|CO514638.1|CO514638 s13dSG46C0400034_327936 Glandular tr... 32 0.43
>gb|CO513023.1|CO513023 s13dSG09G0100004_121972 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 107 bits (54), Expect = 9e-024
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| |||
Sbjct: 16 gaggtggttacacgggagtataccatcaatctccacaagcgtctccatggatgcaccttc 75
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
|||||||||||||| || || |||||||||||||| || ||||| || || |||||||||
Sbjct: 76 aagaagaaggcaccaaaagctatcaaggagatcagaaaatttgctcaaaaagccatgggc 135
Query: 215 ac 216
||
Sbjct: 136 ac 137
Score = 44.1 bits (22), Expect = 1e-004
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcg 365
||||||||||| || || || ||||||||||| || | |||||||||||||| ||||
Sbjct: 229 cgcaagaggaatgacgacgaagatgccaaggaagagttatactcccttgtcactgtcg 286
>gb|CO514290.1|CO514290 s13dSG76G0100004_157242 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 361
Score = 107 bits (54), Expect = 9e-024
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| |||
Sbjct: 95 gaggtggttacacgggagtataccatcaatctccacaagcgtctccatggatgcaccttc 154
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
|||||||||||||| || || |||||||||||||| || ||||| || || |||||||||
Sbjct: 155 aagaagaaggcaccaaaagctatcaaggagatcagaaaatttgctcaaaaagccatgggc 214
Query: 215 ac 216
||
Sbjct: 215 ac 216
Score = 42.1 bits (21), Expect = 4e-004
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcac 360
||||||||||| || || || ||||||||||| || | ||||||||||||||
Sbjct: 308 cgcaagaggaatgacgacgaagatgccaaggaagagttatactcccttgtcac 360
>gb|CO514707.1|CO514707 s13dSG55B0800073_328074 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 528
Score = 99.6 bits (50), Expect = 2e-021
Identities = 104/122 (85%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| |||
Sbjct: 126 gaggtggttacacgggagtataccatcaatctccacaagcgtctccatggatgcaccttc 185
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
|||||||||||||| || || |||||||||||||| || ||||| || | |||||||||
Sbjct: 186 aagaagaaggcaccaaaagctatcaaggagatcagaaaatttgctcaaagagccatgggc 245
Query: 215 ac 216
||
Sbjct: 246 ac 247
Score = 44.1 bits (22), Expect = 1e-004
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcg 365
||||||||||| || || || ||||||||||| || | |||||||||||||| ||||
Sbjct: 339 cgcaagaggaatgacgacgaagatgccaaggaagagttatactcccttgtcactgtcg 396
>gb|AF172172.1|AF172172 Medicago sativa non-symbiotic hemoglobin (MHB1) mRNA, complete cds
Length = 483
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 482 aaaccttttgtatccaa 498
|||||||||||||||||
Sbjct: 26 aaaccttttgtatccaa 10
>gb|CO514638.1|CO514638 s13dSG46C0400034_327936 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 486 cttttgtatccaagga 501
||||||||||||||||
Sbjct: 93 cttttgtatccaagga 78
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1430
Number of Sequences: 7669
Number of extensions: 1430
Number of successful extensions: 333
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 8
length of query: 609
length of database: 3,745,706
effective HSP length: 16
effective length of query: 593
effective length of database: 3,623,002
effective search space: 2148440186
effective search space used: 2148440186
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)