BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738875.2.1
(761 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512849.1|CO512849 s13dSG20D1200094_121624 Glandular tr... 30 2.1
gb|CO513606.1|CO513606 s13dSG16E0300019_139994 Glandular tr... 30 2.1
gb|CO517107.1|CO517107 s13dSG29E0700055_468760 Glandular tr... 30 2.1
gb|AW698809.1|AW698809 r400 non-glandular-haired subtracted... 28 8.5
gb|CB858115.1|CB858115 RX43 Medicago sativa cDNA-AFLP Medic... 28 8.5
gb|CO511801.1|CO511801 s13dSG02B1100093_103502 Glandular tr... 28 8.5
gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular tr... 28 8.5
gb|CO512625.1|CO512625 s13dSG13E0400023_121176 Glandular tr... 28 8.5
gb|CO514137.1|CO514137 s13dSG75F1100091_156936 Glandular tr... 28 8.5
gb|CO514718.1|CO514718 s13dSG55C0800066_328096 Glandular tr... 28 8.5
gb|CO516145.1|CO516145 s13dSG65H0900080_445618 Glandular tr... 28 8.5
gb|AJ888482.1|AJ888482 AJ888482 Medicago sativa subsp. x va... 28 8.5
gb|L39371.1|ALFPEPC Medicago sativa phosphoenolpyruvate car... 28 8.5
>gb|CO512849.1|CO512849 s13dSG20D1200094_121624 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 ctcaccttccacctg 64
|||||||||||||||
Sbjct: 157 ctcaccttccacctg 171
>gb|CO513606.1|CO513606 s13dSG16E0300019_139994 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 738 aagcttggctggttt 752
|||||||||||||||
Sbjct: 332 aagcttggctggttt 318
>gb|CO517107.1|CO517107 s13dSG29E0700055_468760 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 428
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 626 atatatgcatttcat 640
|||||||||||||||
Sbjct: 406 atatatgcatttcat 420
>gb|AW698809.1|AW698809 r400 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 403
Score = 28.2 bits (14), Expect = 8.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 365 ggcgtcctcttcggcttc 382
|||||| |||||||||||
Sbjct: 222 ggcgtcttcttcggcttc 239
>gb|CB858115.1|CB858115 RX43 Medicago sativa cDNA-AFLP Medicago sativa cDNA, mRNA sequence
Length = 243
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 602 atcatcatatataa 615
||||||||||||||
Sbjct: 181 atcatcatatataa 168
>gb|CO511801.1|CO511801 s13dSG02B1100093_103502 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 608 atatataataatat 621
||||||||||||||
Sbjct: 511 atatataataatat 498
>gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 288 tcctcttcatcctc 301
||||||||||||||
Sbjct: 63 tcctcttcatcctc 50
>gb|CO512625.1|CO512625 s13dSG13E0400023_121176 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 560
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 ctccatcttctggg 164
||||||||||||||
Sbjct: 519 ctccatcttctggg 506
>gb|CO514137.1|CO514137 s13dSG75F1100091_156936 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 423 tccccatcaccacc 436
||||||||||||||
Sbjct: 296 tccccatcaccacc 309
>gb|CO514718.1|CO514718 s13dSG55C0800066_328096 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 388
Score = 28.2 bits (14), Expect = 8.5
Identities = 32/38 (84%)
Strand = Plus / Plus
Query: 17 ggcgccatcgacggccacctccgcgaggtggggctcac 54
||||| || ||||| || ||||| || |||||||||||
Sbjct: 54 ggcgcgattgacggacatctccgtgaagtggggctcac 91
>gb|CO516145.1|CO516145 s13dSG65H0900080_445618 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 738 aagcttggctggtt 751
||||||||||||||
Sbjct: 497 aagcttggctggtt 510
>gb|AJ888482.1|AJ888482 AJ888482 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 798
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 535 ctgctataattgtc 548
||||||||||||||
Sbjct: 434 ctgctataattgtc 447
>gb|L39371.1|ALFPEPC Medicago sativa phosphoenolpyruvate carboxylase (PEPC) gene,
complete cds
Length = 7490
Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 569 gatactatttttcc 582
||||||||||||||
Sbjct: 671 gatactatttttcc 684
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1140
Number of Sequences: 7669
Number of extensions: 1140
Number of successful extensions: 292
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 13
length of query: 761
length of database: 3,745,706
effective HSP length: 16
effective length of query: 745
effective length of database: 3,623,002
effective search space: 2699136490
effective search space used: 2699136490
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)