BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698704.1|AW698704 R169 non-glandular-haired subtracted... 32 0.51
gb|CO511933.1|CO511933 s13dSG05G0400036_103766 Glandular tr... 30 2.0
gb|CO511951.1|CO511951 s13dSG05H1200104_103802 Glandular tr... 30 2.0
gb|CO512413.1|CO512413 s13dSG80F0400031_114340 Glandular tr... 30 2.0
gb|CO517060.1|CO517060 s13dSG31H0100012_468666 Glandular tr... 30 2.0
gb|U15591.1|MSU15591 Medicago sativa cytosolic glutamine sy... 30 2.0
gb|CB165090.1|CB165090 14II Alfalfa developing flower bud l... 28 8.0
gb|CO513053.1|CO513053 s13dSG89B0700057_122032 Glandular tr... 28 8.0
gb|CO513714.1|CO513714 s13dSG15C0500034_140210 Glandular tr... 28 8.0
gb|CO515136.1|CO515136 s13dSG40G0600052_399137 Glandular tr... 28 8.0
gb|CO516007.1|CO516007 s13dSG61H0200016_445342 Glandular tr... 28 8.0
gb|CO516216.1|CO516216 s13dSG67G1100088_445760 Glandular tr... 28 8.0
gb|CO516763.1|CO516763 s13dSG94B0300025_446854 Glandular tr... 28 8.0
gb|L38479.1|ALFPHYT Medicago sativa phytohemagglutinin gene... 28 8.0
gb|U18296.1|MSU18296 Medicago sativa lectin (Mslec1) gene, ... 28 8.0
emb|X13287.1|MSNOD25 Medicago sativa nodulin-25 gene 28 8.0
gb|AF129087.1|AF129087 Medicago sativa mitogen-activated pr... 28 8.0
emb|AJ249246.2|MSA249246 Medicago sativa mRNA for hydropero... 28 8.0
emb|CQ760957.1| Sequence 2 from Patent WO2004002216 28 8.0
emb|CQ760963.1| Sequence 8 from Patent WO2004002216 28 8.0
emb|Y16754.1|MSLEC2 Medicago sativa lec2 gene, complete CDS 28 8.0
gb|DQ241800.1| Medicago sativa cytoplasmic acetyl-CoA carbo... 28 8.0
>gb|AW698704.1|AW698704 R169 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 516
Score = 32.2 bits (16), Expect = 0.51
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 500 accaagttctttcaga 515
||||||||||||||||
Sbjct: 32 accaagttctttcaga 17
>gb|CO511933.1|CO511933 s13dSG05G0400036_103766 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 448
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 469 cactgtgattgttgc 483
|||||||||||||||
Sbjct: 140 cactgtgattgttgc 154
>gb|CO511951.1|CO511951 s13dSG05H1200104_103802 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 501 ccaagttctttcaga 515
|||||||||||||||
Sbjct: 481 ccaagttctttcaga 495
>gb|CO512413.1|CO512413 s13dSG80F0400031_114340 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 agcatcagtgcacac 228
|||||||||||||||
Sbjct: 88 agcatcagtgcacac 74
>gb|CO517060.1|CO517060 s13dSG31H0100012_468666 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 380
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 tccaggacaagatag 156
|||||||||||||||
Sbjct: 295 tccaggacaagatag 309
>gb|U15591.1|MSU15591 Medicago sativa cytosolic glutamine synthetase (GS1) mRNA, complete
cds
Length = 1372
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 tccaggacaagatag 156
|||||||||||||||
Sbjct: 280 tccaggacaagatag 294
>gb|CB165090.1|CB165090 14II Alfalfa developing flower bud library Medicago sativa cDNA,
mRNA sequence
Length = 70
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 caaagcttggtggt 46
||||||||||||||
Sbjct: 7 caaagcttggtggt 20
>gb|CO513053.1|CO513053 s13dSG89B0700057_122032 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 560
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 280 tgatgatgatggcc 293
||||||||||||||
Sbjct: 211 tgatgatgatggcc 224
>gb|CO513714.1|CO513714 s13dSG15C0500034_140210 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 356
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 tgaactcgttgctg 61
||||||||||||||
Sbjct: 172 tgaactcgttgctg 185
>gb|CO515136.1|CO515136 s13dSG40G0600052_399137 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 340
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 tgaactcgttgctg 61
||||||||||||||
Sbjct: 147 tgaactcgttgctg 160
>gb|CO516007.1|CO516007 s13dSG61H0200016_445342 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 430
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 472 tgtgattgttgctc 485
||||||||||||||
Sbjct: 396 tgtgattgttgctc 383
>gb|CO516216.1|CO516216 s13dSG67G1100088_445760 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 315 acttctacactagc 328
||||||||||||||
Sbjct: 95 acttctacactagc 82
>gb|CO516763.1|CO516763 s13dSG94B0300025_446854 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 537
Score = 28.2 bits (14), Expect = 8.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 690 ttgttcattcgctatctt 707
||||||||||||| ||||
Sbjct: 320 ttgttcattcgctttctt 303
>gb|L38479.1|ALFPHYT Medicago sativa phytohemagglutinin gene, complete cds
Length = 1716
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 638 tatcatgttctgca 651
||||||||||||||
Sbjct: 1553 tatcatgttctgca 1540
>gb|U18296.1|MSU18296 Medicago sativa lectin (Mslec1) gene, complete cds
Length = 1716
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 638 tatcatgttctgca 651
||||||||||||||
Sbjct: 1553 tatcatgttctgca 1540
>emb|X13287.1|MSNOD25 Medicago sativa nodulin-25 gene
Length = 10048
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 350 cacataattatttt 363
||||||||||||||
Sbjct: 5823 cacataattatttt 5810
>gb|AF129087.1|AF129087 Medicago sativa mitogen-activated protein kinase homologue (TDY1)
gene, complete cds
Length = 7346
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 557 agtaaagtttgcca 570
||||||||||||||
Sbjct: 1487 agtaaagtttgcca 1474
>emb|AJ249246.2|MSA249246 Medicago sativa mRNA for hydroperoxide lyase (cyp74B4v2 gene)
Length = 1471
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 ttgctgatgaagat 27
||||||||||||||
Sbjct: 569 ttgctgatgaagat 556
>emb|CQ760957.1| Sequence 2 from Patent WO2004002216
Length = 678
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 435 gtaagtttctggat 448
||||||||||||||
Sbjct: 452 gtaagtttctggat 439
>emb|CQ760963.1| Sequence 8 from Patent WO2004002216
Length = 1482
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 435 gtaagtttctggat 448
||||||||||||||
Sbjct: 1012 gtaagtttctggat 999
>emb|Y16754.1|MSLEC2 Medicago sativa lec2 gene, complete CDS
Length = 1394
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 638 tatcatgttctgca 651
||||||||||||||
Sbjct: 1001 tatcatgttctgca 988
>gb|DQ241800.1| Medicago sativa cytoplasmic acetyl-CoA carboxylase gene, partial
cds
Length = 497
Score = 28.2 bits (14), Expect = 8.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gcaaagcttggtgg 45
||||||||||||||
Sbjct: 198 gcaaagcttggtgg 185
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1538
Number of Sequences: 7669
Number of extensions: 1538
Number of successful extensions: 363
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 28
length of query: 715
length of database: 3,745,706
effective HSP length: 16
effective length of query: 699
effective length of database: 3,623,002
effective search space: 2532478398
effective search space used: 2532478398
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)