BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.65
(673 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 96 4e-020
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 82 6e-016
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 72 6e-013
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 50 2e-006
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 50 2e-006
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 95.6 bits (48), Expect = 4e-020
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 254 caagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcaccc 313
|||||||||||| || || ||||||||||||||||||||||| || |||||||| || ||
Sbjct: 226 caagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcc 285
Query: 314 ggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 373
|||||||| ||||| |||||| ||| ||||||||| ||||||||| || |||||
Sbjct: 286 tgacatcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctt 345
Query: 374 cgagaagctcgc 385
|||||||||||
Sbjct: 346 tgagaagctcgc 357
Score = 32.2 bits (16), Expect = 0.48
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 408 cgctacaacaagaagcccaccatc 431
|||||||||||||| || ||||||
Sbjct: 380 cgctacaacaagaaacctaccatc 403
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 81.8 bits (41), Expect = 6e-016
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 254 caagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcaccc 313
||||||||| || || || ||||||||||||||||||||||| ||||| || || |||||
Sbjct: 253 caagaagagtgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcaccc 312
Query: 314 ggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 373
||||| || ||||| ||| |||||| ||||||||| |||||||| ||||||||
Sbjct: 313 agacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgacatctt 372
Query: 374 cgagaagct 382
|||||||||
Sbjct: 373 cgagaagct 381
Score = 54.0 bits (27), Expect = 1e-007
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 81 atggcacccaaggcggagaagaagccggcggcgaagaagcccgcagaggag 131
|||||||| |||| ||||||||||| |||| |||||| ||||||||||||
Sbjct: 92 atggcaccaaagggagagaagaagccagcggagaagaaacccgcagaggag 142
Score = 42.1 bits (21), Expect = 5e-004
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 408 cgctacaacaagaagcccaccatcacctcccgggagatccagacc 452
||||||||||||||||| || ||||| ||| |||| || ||||||
Sbjct: 407 cgctacaacaagaagccaactatcacttccagggaaattcagacc 451
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 71.9 bits (36), Expect = 6e-013
Identities = 102/124 (82%)
Strand = Plus / Plus
Query: 259 agagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggaca 318
||||||| || || |||||||||||||||||||||| || |||||||| || || ||||
Sbjct: 242 agagcgttgaaacctacaagatctacatcttcaagggtctcaagcaggttcatcctgaca 301
Query: 319 tcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgaga 378
|||| ||||| |||||| ||| ||||||||| ||||||||| || ||||| ||||
Sbjct: 302 tcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctttgaga 361
Query: 379 agct 382
||||
Sbjct: 362 agct 365
Score = 69.9 bits (35), Expect = 2e-012
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 411 tacaacaagaagcccaccatcacctcccgggagatccagacctccgtccgcctcgttcta 470
||||||||||| || ||||||||||| |||||||| ||||| | || || || |||||
Sbjct: 394 tacaacaagaaacctaccatcacctctcgggagattcagactgctgttcgtcttgttctt 453
Query: 471 cccggcgagctcgccaagcacgccgtctcggagggcaccaaggccgtcaccaagttcac 529
|| || || ||||||||||| || ||||| ||||| |||||||| || ||||| |||||
Sbjct: 454 cctggtgaactcgccaagcatgctgtctctgagggaaccaaggctgttaccaaattcac 512
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 50.1 bits (25), Expect = 2e-006
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 255 aagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggt 307
||||| ||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 200 aagaaaagcgttgaaacatacaagatatacatcttcaaggttctgaaacaggt 252
Score = 38.2 bits (19), Expect = 0.008
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 90 aaggcggagaagaagccggcggcgaagaagcccgcagag 128
||||| || ||||| || |||| ||||||||||||||||
Sbjct: 80 aaggcagaaaagaaacccgcggagaagaagcccgcagag 118
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 50.1 bits (25), Expect = 2e-006
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 357 ttcatcaacgacatcttcgagaagctcgc 385
||||||||||||||||||||||| |||||
Sbjct: 20 ttcatcaacgacatcttcgagaaactcgc 48
Score = 34.2 bits (17), Expect = 0.12
Identities = 35/41 (85%)
Strand = Plus / Plus
Query: 411 tacaacaagaagcccaccatcacctcccgggagatccagac 451
|||||||||||||| || ||||| ||| |||| || |||||
Sbjct: 74 tacaacaagaagccaacaatcacttccagggaaattcagac 114
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 997
Number of Sequences: 7669
Number of extensions: 997
Number of successful extensions: 244
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 17
length of query: 673
length of database: 3,745,706
effective HSP length: 16
effective length of query: 657
effective length of database: 3,623,002
effective search space: 2380312314
effective search space used: 2380312314
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)