BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.628
(1238 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512532.1|CO512532 s13dSG08C0200006_120990 Glandular tr... 92 1e-018
gb|AJ410124.1|AJ410124 AJ410124 Medicago sativa library (Ka... 34 0.23
gb|CO512071.1|CO512071 s13dSG18E0700051_108462 Glandular tr... 34 0.23
gb|CO514292.1|CO514292 s13dSG76G0300020_157246 Glandular tr... 34 0.23
>gb|CO512532.1|CO512532 s13dSG08C0200006_120990 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 91.7 bits (46), Expect = 1e-018
Identities = 185/232 (79%)
Strand = Plus / Minus
Query: 841 tgtacccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttct 900
|||| |||||||||||||| |||||||| || ||||| | || || || ||||||||||
Sbjct: 490 tgtaaccacagatatctggaccaaacatgatactgtagggagtatccccgccaaatttct 431
Query: 901 tctggtctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgct 960
|||| || ||||| || | |||||||| | ||| ||||| || |||||||| ||||| |
Sbjct: 430 tctgatcaacatcgccgctaagcaatttcatgtaaccaccaccacagtcaagtttctgtt 371
Query: 961 cgtgcttcacagagaactgcagcaccagggtcttatccttgttgctgaactcagggtatt 1020
| ||||| ||||| || || | || || || ||||||||||||||||| |||||| | |
Sbjct: 370 catgcttgacagaaaattggaagactagtgtgttatccttgttgctgaattcagggaact 311
Query: 1021 cggctgaaatggcatagaacctgtaatcctcggaggnntgaatacctttgtc 1072
| || || |||||||| || |||||||| || || ||||||||||||||
Sbjct: 310 cagcagagatggcataaaatctgtaatcttcactggtttgaatacctttgtc 259
>gb|AJ410124.1|AJ410124 AJ410124 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U492, mRNA sequence
Length = 657
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 809 catctcacatccttctc 825
|||||||||||||||||
Sbjct: 357 catctcacatccttctc 341
>gb|CO512071.1|CO512071 s13dSG18E0700051_108462 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 600
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 809 catctcacatccttctc 825
|||||||||||||||||
Sbjct: 415 catctcacatccttctc 399
>gb|CO514292.1|CO514292 s13dSG76G0300020_157246 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 809 catctcacatccttctc 825
|||||||||||||||||
Sbjct: 409 catctcacatccttctc 393
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2223
Number of Sequences: 7669
Number of extensions: 2223
Number of successful extensions: 503
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 5
length of query: 1238
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1222
effective length of database: 3,623,002
effective search space: 4427308444
effective search space used: 4427308444
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)