BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.49
(1833 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 105 1e-022
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 101 2e-021
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 74 4e-013
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 50 6e-006
gb|CO512684.1|CO512684 s13dSG19D0400030_121294 Glandular tr... 38 0.021
gb|CO515645.1|CO515645 s13dSG60B0600057_419439 Glandular tr... 38 0.021
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 36 0.085
gb|AF195800.1|AF195800 Medicago sativa isoflavone synthase ... 34 0.33
gb|AF195802.1|AF195802 Medicago sativa isoflavone synthase ... 34 0.33
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 105 bits (53), Expect = 1e-022
Identities = 113/133 (84%)
Strand = Plus / Plus
Query: 1181 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 1240
|||||||||||| || |||||||||||||||||||||||||| || |||||||| || ||
Sbjct: 226 caagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcc 285
Query: 1241 ggacattggcatctcctccaaggccatgtcgatcatgaactccttcattaacgatatctt 1300
||||| || ||||| |||||| ||| |||||||||| |||||| || ||||||||
Sbjct: 286 tgacatcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctt 345
Query: 1301 cgagaagctcgct 1313
||||||||||||
Sbjct: 346 tgagaagctcgct 358
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 101 bits (51), Expect = 2e-021
Identities = 216/271 (79%)
Strand = Plus / Plus
Query: 1186 agagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcacccggaca 1245
||||||| || ||||||||||||||||||||||||| || |||||||| || || ||||
Sbjct: 242 agagcgttgaaacctacaagatctacatcttcaagggtctcaagcaggttcatcctgaca 301
Query: 1246 ttggcatctcctccaaggccatgtcgatcatgaactccttcattaacgatatcttcgaga 1305
| || ||||| |||||| ||| |||||||||| |||||| || |||||||| ||||
Sbjct: 302 tcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctttgaga 361
Query: 1306 agctcgctgctgaggccgccaagctcgcgcgctataacaagaagcctaccatcacctccc 1365
|||| ||| || || ||| || ||| | || |||||||| |||||||||||||| |
Sbjct: 362 agcttgctcaggaatcctccagacttgcgaggtacaacaagaaacctaccatcacctctc 421
Query: 1366 gtgagatccagacctccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtct 1425
| ||||| ||||| | || || || || ||||| || || ||||||||||| || ||||
Sbjct: 422 gggagattcagactgctgttcgtcttgttcttcctggtgaactcgccaagcatgctgtct 481
Query: 1426 ccgagggcaccaaggccgtcaccaagttcac 1456
| ||||| |||||||| || ||||| |||||
Sbjct: 482 ctgagggaaccaaggctgttaccaaattcac 512
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 73.8 bits (37), Expect = 4e-013
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 1181 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 1240
||||||||| || || || ||||||||||||||||||||||| ||||| || || |||||
Sbjct: 253 caagaagagtgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcaccc 312
Query: 1241 ggacattggcatctcctccaaggccatgtcgatcatgaactccttcattaacgatatctt 1300
|||||||| ||||| ||| |||||| ||||||||| ||||| || || |||||
Sbjct: 313 agacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgacatctt 372
Query: 1301 cgagaagct 1309
|||||||||
Sbjct: 373 cgagaagct 381
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 50.1 bits (25), Expect = 6e-006
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1182 aagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggt 1234
||||| ||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 200 aagaaaagcgttgaaacatacaagatatacatcttcaaggttctgaaacaggt 252
>gb|CO512684.1|CO512684 s13dSG19D0400030_121294 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 358
Score = 38.2 bits (19), Expect = 0.021
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 821 caacagcaccatctccttc 839
|||||||||||||||||||
Sbjct: 108 caacagcaccatctccttc 90
>gb|CO515645.1|CO515645 s13dSG60B0600057_419439 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.021
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 821 caacagcaccatctccttc 839
|||||||||||||||||||
Sbjct: 114 caacagcaccatctccttc 96
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 36.2 bits (18), Expect = 0.085
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 1284 ttcattaacgatatcttcgagaagctcgct 1313
||||| ||||| ||||||||||| ||||||
Sbjct: 20 ttcatcaacgacatcttcgagaaactcgct 49
>gb|AF195800.1|AF195800 Medicago sativa isoflavone synthase 1 (ifs1) mRNA, partial cds
Length = 1501
Score = 34.2 bits (17), Expect = 0.33
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 820 ccaacagcaccatctcc 836
|||||||||||||||||
Sbjct: 508 ccaacagcaccatctcc 524
>gb|AF195802.1|AF195802 Medicago sativa isoflavone synthase 3 (ifs3) mRNA, partial cds
Length = 1501
Score = 34.2 bits (17), Expect = 0.33
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 820 ccaacagcaccatctcc 836
|||||||||||||||||
Sbjct: 508 ccaacagcaccatctcc 524
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3351
Number of Sequences: 7669
Number of extensions: 3351
Number of successful extensions: 862
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 19
length of query: 1833
length of database: 3,745,706
effective HSP length: 17
effective length of query: 1816
effective length of database: 3,615,333
effective search space: 6565444728
effective search space used: 6565444728
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)