BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.489
(1666 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515574.1|CO515574 s13dSG47A0300021_418207 Glandular tr... 117 3e-026
gb|CO515747.1|CO515747 s13dSG77D0300030_419643 Glandular tr... 117 3e-026
gb|CO516729.1|CO516729 s13dSG74F0700061_446786 Glandular tr... 105 1e-022
gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular tr... 56 8e-008
gb|CO513977.1|CO513977 s13dSG71H0400032_156616 Glandular tr... 34 0.30
gb|AF020269.1|AF020269 Medicago sativa chloroplast malate d... 34 0.30
>gb|CO515574.1|CO515574 s13dSG47A0300021_418207 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 542
Score = 117 bits (59), Expect = 3e-026
Identities = 110/127 (86%)
Strand = Plus / Plus
Query: 422 atgggcggtgtttcagctgctgtttcaaagactgctgctgctcccatcgagcgtgtgaag 481
||||| |||||||||||||| ||||| || || ||||||||||||||||| ||| | |||
Sbjct: 368 atgggtggtgtttcagctgccgtttccaaaaccgctgctgctcccatcgaacgtattaag 427
Query: 482 ctgcttattcagaaccaagatgagatgattaagtctggtaggctatcagagccgtacaag 541
|| || || |||||||| || |||||||| |||||||||||||| || ||||| ||||||
Sbjct: 428 cttctgatccagaaccaggacgagatgatcaagtctggtaggctttctgagccctacaag 487
Query: 542 ggtattg 548
|||||||
Sbjct: 488 ggtattg 494
>gb|CO515747.1|CO515747 s13dSG77D0300030_419643 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 117 bits (59), Expect = 3e-026
Identities = 110/127 (86%)
Strand = Plus / Plus
Query: 422 atgggcggtgtttcagctgctgtttcaaagactgctgctgctcccatcgagcgtgtgaag 481
||||| |||||||||||||| ||||| || || ||||||||||||||||| ||| | |||
Sbjct: 373 atgggtggtgtttcagctgccgtttccaaaaccgctgctgctcccatcgaacgtattaag 432
Query: 482 ctgcttattcagaaccaagatgagatgattaagtctggtaggctatcagagccgtacaag 541
|| || || |||||||| || |||||||| |||||||||||||| || ||||| ||||||
Sbjct: 433 cttctgatccagaaccaggacgagatgatcaagtctggtaggctttctgagccctacaag 492
Query: 542 ggtattg 548
|||||||
Sbjct: 493 ggtattg 499
>gb|CO516729.1|CO516729 s13dSG74F0700061_446786 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 504
Score = 105 bits (53), Expect = 1e-022
Identities = 107/125 (85%)
Strand = Plus / Plus
Query: 422 atgggcggtgtttcagctgctgtttcaaagactgctgctgctcccatcgagcgtgtgaag 481
||||| |||||||||||||| ||||| || ||||||||||||||||| || ||| | |||
Sbjct: 380 atgggtggtgtttcagctgccgtttccaaaactgctgctgctcccattgaacgtattaag 439
Query: 482 ctgcttattcagaaccaagatgagatgattaagtctggtaggctatcagagccgtacaag 541
|| | || || ||||| ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 440 cttttgatccaaaaccaggatgagatgatcaagtctggtaggctctctgagccctacaag 499
Query: 542 ggtat 546
|||||
Sbjct: 500 ggtat 504
>gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 56.0 bits (28), Expect = 8e-008
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 1184 aagtccctgttcaagggtgctggtgctaacattcttcgtgccattgctggtgctggtgtg 1243
||||| || ||||| ||||||||||| ||||| | ||||| |||| ||||||||||||
Sbjct: 141 aagtctcttttcaaaggtgctggtgcaaacatattgcgtgctgttgcaggtgctggtgtg 200
Query: 1244 ctttctggctatgaccagct 1263
||| |||| |||||| ||||
Sbjct: 201 cttgctggttatgacaagct 220
Score = 38.2 bits (19), Expect = 0.019
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 1097 agaaggatgatgatgacatctggtgaggctgtcaagtacaagagctc 1143
||||| ||||||||||| ||||| || ||||| ||||| || |||||
Sbjct: 54 agaagaatgatgatgacttctggagaagctgtgaagtataacagctc 100
>gb|CO513977.1|CO513977 s13dSG71H0400032_156616 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 493
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 742 tggtgctgctggtgctt 758
|||||||||||||||||
Sbjct: 194 tggtgctgctggtgctt 210
>gb|AF020269.1|AF020269 Medicago sativa chloroplast malate dehydrogenase precursor (p1mdh)
mRNA, nuclear gene encoding chloroplast protein, complete
cds
Length = 2050
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1368 atctggtgaagtttttg 1384
|||||||||||||||||
Sbjct: 489 atctggtgaagtttttg 505
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5546
Number of Sequences: 7669
Number of extensions: 5546
Number of successful extensions: 1750
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1742
Number of HSP's gapped (non-prelim): 8
length of query: 1666
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1650
effective length of database: 3,623,002
effective search space: 5977953300
effective search space used: 5977953300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)