BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.462
(823 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 98 1e-020
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 94 2e-019
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 66 4e-011
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 50 3e-006
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 38 0.010
gb|CO514262.1|CO514262 s13dSG76D0800062_157186 Glandular tr... 34 0.15
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 97.6 bits (49), Expect = 1e-020
Identities = 109/129 (84%)
Strand = Plus / Plus
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||| || |||||||||||||||||||||||||| || |||||||| || ||
Sbjct: 226 caagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcc 285
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||| || || |||||| ||| ||||||||| ||||||||| || |||||
Sbjct: 286 tgacatcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctt 345
Query: 373 tgagaagct 381
|||||||||
Sbjct: 346 tgagaagct 354
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 93.7 bits (47), Expect = 2e-019
Identities = 215/271 (79%)
Strand = Plus / Plus
Query: 258 agagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgaca 317
||||||| || ||||||||||||||||||||||||| || |||||||| || || ||||
Sbjct: 242 agagcgttgaaacctacaagatctacatcttcaagggtctcaagcaggttcatcctgaca 301
Query: 318 tcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgaga 377
|||| || || |||||| ||| ||||||||| ||||||||| || ||||||||||
Sbjct: 302 tcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctttgaga 361
Query: 378 agctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtccc 437
|||| || || || ||| || ||| ||||||||||||| || |||||||| || |
Sbjct: 362 agcttgctcaggaatcctccagacttgcgaggtacaacaagaaacctaccatcacctctc 421
Query: 438 gcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtct 497
| ||||| ||||| | || || || || || || || || ||||||||||| || ||||
Sbjct: 422 gggagattcagactgctgttcgtcttgttcttcctggtgaactcgccaagcatgctgtct 481
Query: 498 ccgagggaaccaaggccgtcaccaagttcac 528
| |||||||||||||| || ||||| |||||
Sbjct: 482 ctgagggaaccaaggctgttaccaaattcac 512
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 65.9 bits (33), Expect = 4e-011
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
||||||||| || || || ||||||||||||||||||||||| ||||| || || |||||
Sbjct: 253 caagaagagtgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcaccc 312
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
||||| || || || ||| |||||| ||||||||| |||||||| ||||||||
Sbjct: 313 agacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgacatctt 372
Query: 373 tgagaagct 381
||||||||
Sbjct: 373 cgagaagct 381
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 107 gagaagaagccagcggagaagaa 129
|||||||||||||||||||||||
Sbjct: 107 gagaagaagccagcggagaagaa 129
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 50.1 bits (25), Expect = 3e-006
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 254 aagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggt 306
||||| ||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 200 aagaaaagcgttgaaacatacaagatatacatcttcaaggttctgaaacaggt 252
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 38.2 bits (19), Expect = 0.010
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 356 ttcatcaacgacatctttgagaa 378
||||||||||||||||| |||||
Sbjct: 20 ttcatcaacgacatcttcgagaa 42
>gb|CO514262.1|CO514262 s13dSG76D0800062_157186 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 462
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 524 ttcaccagcaactgagc 540
|||||||||||||||||
Sbjct: 251 ttcaccagcaactgagc 235
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2071
Number of Sequences: 7669
Number of extensions: 2071
Number of successful extensions: 511
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 28
length of query: 823
length of database: 3,745,706
effective HSP length: 16
effective length of query: 807
effective length of database: 3,623,002
effective search space: 2923762614
effective search space used: 2923762614
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)