BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.355
(842 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 113 2e-025
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 98 1e-020
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 90 3e-018
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 46 4e-005
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 42 6e-004
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 113 bits (57), Expect = 2e-025
Identities = 213/265 (80%)
Strand = Plus / Minus
Query: 333 ttggtaacggccttggtgccctcggagacggcgtgcttggcgagctcgccaggaaggacg 392
|||||||| |||||||| ||||| ||||| || ||||||||||| || |||||||| ||
Sbjct: 506 ttggtaacagccttggttccctcagagacagcatgcttggcgagttcaccaggaagaaca 447
Query: 393 aggcgcaccgaagtctggatctcccgggaggttatggtgggcttcttgttgtagcgggcg 452
|| || || | |||||| |||||||| ||||| ||||| || ||||||||||| | ||
Sbjct: 446 agacgaacagcagtctgaatctcccgagaggtgatggtaggtttcttgttgtacctcgca 387
Query: 453 agcttggcggcctcggcagccagcttctcgaagatgtcgttgatgaaggagttcatgatg 512
|| ||| || || ||| |||||||| ||||| || ||||||||| |||||||||
Sbjct: 386 agtctggaggattcctgagcaagcttctcaaagatatcattgatgaagctgttcatgatc 327
Query: 513 gacatggccttggacgagataccaatgtccgggtgcacctgcttgagcaccttgaagatg 572
||| |||||| |||||||| ||||| || || ||||||||||| |||||||||||
Sbjct: 326 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagacccttgaagatg 267
Query: 573 tagatcttgtacgtctcgacgctct 597
||||||||||| || || |||||||
Sbjct: 266 tagatcttgtaggtttcaacgctct 242
Score = 36.2 bits (18), Expect = 0.039
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 690 ggcttcttctccgcgggcttcttctc 715
||||||||||| ||||| ||||||||
Sbjct: 150 ggcttcttctcagcgggtttcttctc 125
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 97.6 bits (49), Expect = 1e-020
Identities = 109/129 (84%)
Strand = Plus / Minus
Query: 474 agcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagata 533
|||||||| ||||| || ||||||||| ||||||||| ||| |||||| ||||||
Sbjct: 354 agcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagata 295
Query: 534 ccaatgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtacgtctcgacg 593
|| ||||| || || ||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 294 ccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacg 235
Query: 594 ctcttcttg 602
|||||||||
Sbjct: 234 ctcttcttg 226
Score = 36.2 bits (18), Expect = 0.039
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 690 ggcttcttctccgcgggcttcttctc 715
||||||||||| ||||| ||||||||
Sbjct: 138 ggcttcttctctgcgggtttcttctc 113
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 89.7 bits (45), Expect = 3e-018
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 474 agcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagata 533
||||||||||||||||| |||||||| ||||||||| |||||| ||| ||||||
Sbjct: 381 agcttctcgaagatgtcattgatgaaactgttcatgatacccatggctttgcttgagata 322
Query: 534 ccaatgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtacgtctcgacg 593
|||||||| ||||| || || || || ||||||||||||||||||||||| || || ||
Sbjct: 321 ccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaaca 262
Query: 594 ctcttcttg 602
|||||||||
Sbjct: 261 ctcttcttg 253
Score = 38.2 bits (19), Expect = 0.010
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 693 ttcttctccgcgggcttcttctc 715
||||||||||| |||||||||||
Sbjct: 129 ttcttctccgctggcttcttctc 107
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 432 ggcttcttgttgtagcg 448
|||||||||||||||||
Sbjct: 423 ggcttcttgttgtagcg 407
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 477 ttctcgaagatgtcgttgatgaa 499
|||||||||||||||||||||||
Sbjct: 42 ttctcgaagatgtcgttgatgaa 20
Score = 36.2 bits (18), Expect = 0.039
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 326 agtaaacttggtaacggccttggtgccctc 355
|||||||||||| || |||||||| |||||
Sbjct: 193 agtaaacttggtcacagccttggtaccctc 164
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 6e-004
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 561 accttgaagatgtagatcttgtacgtctcgacgctcttctt 601
|||||||||||||| |||||||| || || ||||| |||||
Sbjct: 240 accttgaagatgtatatcttgtatgtttcaacgcttttctt 200
Score = 40.1 bits (20), Expect = 0.002
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 690 ggcttcttctccgcgggcttcttctcggcctt 721
||||||||||||||||| ||||| || |||||
Sbjct: 111 ggcttcttctccgcgggtttcttttctgcctt 80
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1868
Number of Sequences: 7669
Number of extensions: 1868
Number of successful extensions: 542
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 23
length of query: 842
length of database: 3,745,706
effective HSP length: 16
effective length of query: 826
effective length of database: 3,623,002
effective search space: 2992599652
effective search space used: 2992599652
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)